WormBase Tree Display for Variation: WBVar01260944

WBVar01260944 Evidence: Paper_evidence: WBPaper00037807
  Name: Public_name: WBVar01260944
    Other_name: cewivar00386354
      Y55D5A.5f.1:c.58+580A>G
      Y55D5A.5d.1:c.2347+580A>G
      Y55D5A.5e.1:c.2260+580A>G
      Y55D5A.5c.1:c.2488+580A>G
      Y55D5A.5a.1:c.2488+580A>G
    HGVSg: CHROMOSOME_III:g.3009831T>C
  Sequence_details: SMap: S_parent: Sequence: Y55D5A
    Flanking_sequences: CTGGACAACGCGTGGGAAAGTGTCGTCTACTCCACACGGACAAATACATT AGTTTTACAACTAAAATCGAGCCGCGACGCGACACGCAACGCGCCGTAAA
    Mapping_target: Y55D5A
    Type_of_mutation: Substitution: t C Paper_evidence: WBPaper00037807
    SeqStatus: Sequenced
  Variation_type: SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00006642 From_analysis: WGS_De_Bono
      WBStrain00006643 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006645 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023138 From_analysis: Million_mutation_project_reanalysis
    Laboratory: AX
    Analysis: WGS_De_Bono
      Million_mutation_project_reanalysis
    DB_info: Database: dbSNP_ss ss 539096793
    Status: Live
  Affects: Gene: WBGene00000898
    Transcript: Y55D5A.5e.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55D5A.5e.1:c.2260+580A>G
        Intron_number: 8/14
      Y55D5A.5f.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55D5A.5f.1:c.58+580A>G
        Intron_number: 1/7
      Y55D5A.5a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55D5A.5a.1:c.2488+580A>G
        Intron_number: 11/18
      Y55D5A.5c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55D5A.5c.1:c.2488+580A>G
        Intron_number: 12/20
      Y55D5A.5d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55D5A.5d.1:c.2347+580A>G
        Intron_number: 9/15
  Reference: WBPaper00037807
  Method: WGS_De_Bono