WormBase Tree Display for Variation: WBVar01240272
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| WBVar01240272 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01240272 | |||||
| Other_name | cewivar00376189 | ||||||
| F59E12.6a.1:c.-57A>T | |||||||
| F59E12.16b.1:n.250A>T | |||||||
| F59E12.16a.1:n.256A>T | |||||||
| F59E12.6b.1:c.-866A>T | |||||||
| F59E12.6a.2:c.-584A>T | |||||||
| F59E12.16c.1:n.250A>T | |||||||
| HGVSg | CHROMOSOME_II:g.5630028T>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | F59E12 | |||
| Flanking_sequences | GATATTTTAGCACTTTAGGAACTGATTTTAACTATTTCAATACTGTATAA | AATTCTTTCGACAACATTCTCATCGGGCCACATGCGATCACGGAAGAATC | |||||
| Mapping_target | F59E12 | ||||||
| Type_of_mutation | Substitution | t | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00006642 | From_analysis | WGS_De_Bono | |||||
| WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539078189 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00305468 | |||||
| WBGene00019122 | |||||||
| WBGene00235270 | |||||||
| Transcript | F59E12.6a.2 | VEP_consequence | 5_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | F59E12.6a.2:c.-584A>T | ||||||
| cDNA_position | 52 | ||||||
| Exon_number | 1/6 | ||||||
| F59E12.18 | |||||||
| F59E12.6b.1 | VEP_consequence | 5_prime_UTR_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | F59E12.6b.1:c.-866A>T | ||||||
| cDNA_position | 254 | ||||||
| Exon_number | 3/6 | ||||||
| F59E12.6a.1 | VEP_consequence | 5_prime_UTR_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | F59E12.6a.1:c.-57A>T | ||||||
| cDNA_position | 258 | ||||||
| Exon_number | 3/9 | ||||||
| Pseudogene | F59E12.16c | VEP_consequence | non_coding_transcript_exon_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | F59E12.16c.1:n.250A>T | ||||||
| cDNA_position | 250 | ||||||
| Exon_number | 3/8 | ||||||
| F59E12.16b | VEP_consequence | non_coding_transcript_exon_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | F59E12.16b.1:n.250A>T | ||||||
| cDNA_position | 250 | ||||||
| Exon_number | 3/3 | ||||||
| F59E12.16a | VEP_consequence | non_coding_transcript_exon_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | F59E12.16a.1:n.256A>T | ||||||
| cDNA_position | 256 | ||||||
| Exon_number | 3/3 | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
