WormBase Tree Display for Variation: WBVar01237095
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| WBVar01237095 | Evidence | Paper_evidence | WBPaper00037807 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01237095 | ||||
| Other_name | cewivar00652244 | |||||
| K01A2.8c.3:c.-1004del | ||||||
| K01A2.4a.2:c.*96-856del | ||||||
| K01A2.8d.1:c.92+596del | ||||||
| K01A2.8c.2:c.-56+596del | ||||||
| HGVSg | CHROMOSOME_II:g.311470del | |||||
| Sequence_details | SMap | S_parent | Sequence | K01A2 | ||
| Flanking_sequences | CAATACAAAGAAAATGGGGAACTCTTCAAACTAGTGTATTCTCAATACTC | AAAAAAAATGTGCGGGGAACTTTGCTTACTCAACACAATAAAATGGCTCA | ||||
| Mapping_target | K01A2 | |||||
| Type_of_mutation | Deletion | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_De_Bono | ||||||
| Laboratory | AX | |||||
| Analysis | WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | ||||||
| DB_info | Database | dbSNP_ss | ss | 539005346 | ||
| Status | Live | |||||
| Affects | Gene | WBGene00305491 | ||||
| WBGene00019279 | ||||||
| WBGene00305493 | ||||||
| WBGene00305490 | ||||||
| WBGene00019282 | ||||||
| WBGene00305492 | ||||||
| Transcript | K01A2.19 | |||||
| K01A2.16 | ||||||
| K01A2.8c.2 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | K01A2.8c.2:c.-56+596del | |||||
| Intron_number | 1/6 | |||||
| K01A2.8c.3 | VEP_consequence | 5_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | K01A2.8c.3:c.-1004del | |||||
| cDNA_position | 706 | |||||
| Exon_number | 1/7 | |||||
| K01A2.18 | ||||||
| K01A2.17 | ||||||
| K01A2.8d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | K01A2.8d.1:c.92+596del | |||||
| Intron_number | 1/4 | |||||
| K01A2.4a.2 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | K01A2.4a.2:c.*96-856del | |||||
| Intron_number | 12/12 | |||||
| Reference | WBPaper00037807 | |||||
| Method | WGS_De_Bono |
