WormBase Tree Display for Variation: WBVar00604006

WBVar00604006 Name: Public_name: tm5730
    Other_name: F53F10.2a.2:c.316_623+13del
      F53F10.2a.5:c.316_623+13del
      F53F10.2a.3:c.316_623+13del
      F53F10.2c.1:c.*625_*932+13del
      F53F10.2a.4:c.316_623+13del
      F53F10.2a.1:c.316_623+13del
    HGVSg: CHROMOSOME_I:g.3832561_3832881del
  Sequence_details: SMap: S_parent: Sequence: F53F10
    Flanking_sequences: gttctctcgaacaacatcgatgtcaacttt tttttaaaatttccaaatcatatcttaaca
    Mapping_target: F53F10
    Source_location: 7 CHROMOSOME_I 3832560 3832882 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5730_external
      tm5730_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5730
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00018764
    Transcript: F53F10.2c.1 VEP_consequence: splice_donor_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F53F10.2c.1:c.*625_*932+13del
        cDNA_position: 968-?
        Intron_number: 6/6
        Exon_number: 6/7
      F53F10.2a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F53F10.2a.1:c.316_623+13del
        cDNA_position: 1523-?
        CDS_position: 316-?
        Protein_position: 106-?
        Intron_number: 5/7
        Exon_number: 5/8
      F53F10.2a.5 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F53F10.2a.5:c.316_623+13del
        cDNA_position: 781-?
        CDS_position: 316-?
        Protein_position: 106-?
        Intron_number: 4/6
        Exon_number: 4/7
      F53F10.2a.3 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F53F10.2a.3:c.316_623+13del
        cDNA_position: 1335-?
        CDS_position: 316-?
        Protein_position: 106-?
        Intron_number: 4/6
        Exon_number: 4/7
      F53F10.2a.4 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F53F10.2a.4:c.316_623+13del
        cDNA_position: 970-?
        CDS_position: 316-?
        Protein_position: 106-?
        Intron_number: 5/7
        Exon_number: 5/8
      F53F10.2a.2 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F53F10.2a.2:c.316_623+13del
        cDNA_position: 2629-?
        CDS_position: 316-?
        Protein_position: 106-?
        Intron_number: 4/6
        Exon_number: 4/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 17237/17238-17558/17559 (321 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele