WormBase Tree Display for Variation: WBVar00603620

WBVar00603620 Name: Public_name: WBVar00603620
    Other_name: oicr_ce2039
      cewivar00489126
      CE31619:p.Asn1060=
      T18D3.4.1:c.3180C>T
    HGVSg: CHROMOSOME_X:g.12471958C>T
  Sequence_details: SMap: S_parent: Sequence: F45E6
    Flanking_sequences: AGCCAACAAGCTCAAGGCTAAACTCATGCAATCTCTTGAAGACTCCGAGCAGACCATGGAGCGCGAGAAGAGAAA CGTGCTGATATGGACAAGAATAAGAGAAAGGCCGAAGGAGAGCTCAAGATTGCTCAAGAAACCTTGGAAGAGCTC
    Mapping_target: F45E6
    Type_of_mutation: Substitution: c t
    SeqStatus: Sequenced
  Variation_type: SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00022886 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022887 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023192 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027649 From_analysis: WGS_Stein
    Analysis: WGS_Stein
      Million_mutation_project_reanalysis
    DB_info: Database: dbSNP_ss ss ss477720838
    Status: Live
  Affects: Gene: WBGene00003514
    Transcript: T18D3.4.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: T18D3.4.1:c.3180C>T
        HGVSp: CE31619:p.Asn1060=
        cDNA_position: 3268
        CDS_position: 3180
        Protein_position: 1060
        Exon_number: 9/14
        Codon_change: aaC/aaT
        Amino_acid_change: N
  Remark: validatation rate is over 97%
  Method: WGS_Stein