WormBase Tree Display for Variation: WBVar00600937

WBVar00600937 Name: Public_name: tm5562
    Other_name: F33H1.1b.1:c.68+409_257+93del
      F33H1.1a.1:c.68+409_257+93del
    HGVSg: CHROMOSOME_II:g.10167981_10168845del
  Sequence_details: SMap: S_parent: Sequence: F33H1
    Flanking_sequences: gagagaggaaccaaagtagagaggaagtgt ataatttttgaacatttaagcactatagta
    Mapping_target: F33H1
    Source_location: 7 CHROMOSOME_II 10167980 10168846 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5562_external
      tm5562_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5562
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000914
    Transcript: F33H1.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F33H1.1a.1:c.68+409_257+93del
        Intron_number: 2-3/12
        Exon_number: 3/13
      F33H1.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F33H1.1b.1:c.68+409_257+93del
        Intron_number: 2-3/13
        Exon_number: 3/14
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000017 Paper_evidence: WBPaper00053550
        Curator_confirmed: WBPerson139
      WBPhenotype:0000848 Paper_evidence: WBPaper00053550
        Curator_confirmed: WBPerson139
        Remark: longer L3 stage Paper_evidence: WBPaper00053550
            Curator_confirmed: WBPerson139
      WBPhenotype:0001639 Paper_evidence: WBPaper00053550
        Curator_confirmed: WBPerson139
    Phenotype_not_observed: WBPhenotype:0000013 Paper_evidence: WBPaper00053550
        Curator_confirmed: WBPerson139
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Reference: WBPaper00053550
  Remark: 16926/16927-17791/17792 (865 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele