WormBase Tree Display for Variation: WBVar00600891

WBVar00600891 Name: Public_name: tm5527
    Other_name: C01G10.11c.1:c.455-198_491delinsGCGGG
      C01G10.11d.1:c.308-198_344delinsGCGGG
      C01G10.11f.1:c.758-198_794delinsGCGGG
      C01G10.11b.1:c.728-198_764delinsGCGGG
      C01G10.11a.1:c.728-198_764delinsGCGGG
    HGVSg: CHROMOSOME_V:g.15078154_15078388delinsGCGGG
  Sequence_details: SMap: S_parent: Sequence: C01G10
    Flanking_sequences: caatgtaaatcccgctgggaactacagtac atgcgcggaaatggagcagctgattcgggt
    Mapping_target: C01G10
    Source_location: 7 CHROMOSOME_V 15078153 15078389 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: GCGGG
      Deletion
    PCR_product: tm5527_external
      tm5527_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5527
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006808
      WBGene00305285
    Transcript: C01G10.11f.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C01G10.11f.1:c.758-198_794delinsGCGGG
        cDNA_position: ?-918
        CDS_position: ?-794
        Protein_position: ?-265
        Intron_number: 8/11
        Exon_number: 9/12
      C01G10.11d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C01G10.11d.1:c.308-198_344delinsGCGGG
        cDNA_position: ?-344
        CDS_position: ?-344
        Protein_position: ?-115
        Intron_number: 2/4
        Exon_number: 3/5
      C01G10.11b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C01G10.11b.1:c.728-198_764delinsGCGGG
        cDNA_position: ?-775
        CDS_position: ?-764
        Protein_position: ?-255
        Intron_number: 7/9
        Exon_number: 8/10
      C01G10.11a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C01G10.11a.1:c.728-198_764delinsGCGGG
        cDNA_position: ?-772
        CDS_position: ?-764
        Protein_position: ?-255
        Intron_number: 7/10
        Exon_number: 8/11
      C25D7.19
      C01G10.11c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C01G10.11c.1:c.455-198_491delinsGCGGG
        cDNA_position: ?-491
        CDS_position: ?-491
        Protein_position: ?-164
        Intron_number: 4/6
        Exon_number: 5/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 10157/10158-GCGGG-10392/10393 (235 bp deletion + 5 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele