WormBase Tree Display for Variation: WBVar00584089
expand all nodes | collapse all nodes | view schema
| WBVar00584089 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00584089 | |||
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_V:g.3696184C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | W08A12 | |
| Flanking_sequences | AACAATAATAATAATAACCATCAGCAGAATCAGCATCATCGCAAGTATCG | GTGTCACCGGTGAAAACGACGTGTAGCCGATCAGTGTCACTGGAGAGAAA | |||
| Mapping_target | W08A12 | ||||
| Type_of_mutation | Substitution | c | t | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
| WGS_Yanai | |||||
| Person | WBPerson4037 | ||||
| Analysis | WGS_Yanai | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021078 | |||
| Transcript | W08A12.1b.3 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | W08A12.1b.3:c.142-1268C>T | ||||
| Intron_number | 3/7 | ||||
| W08A12.1a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W08A12.1a.1:c.261C>T | ||||
| HGVSp | CE30205:p.Arg87= | ||||
| cDNA_position | 306 | ||||
| CDS_position | 261 | ||||
| Protein_position | 87 | ||||
| Exon_number | 3/8 | ||||
| Codon_change | cgC/cgT | ||||
| Amino_acid_change | R | ||||
| W08A12.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W08A12.1c.1:c.124-1268C>T | ||||
| Intron_number | 3/7 | ||||
| W08A12.1b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W08A12.1b.2:c.142-1268C>T | ||||
| Intron_number | 4/8 | ||||
| W08A12.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W08A12.1b.1:c.142-1268C>T | ||||
| Intron_number | 4/8 | ||||
| W08A12.1d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W08A12.1d.1:c.213C>T | ||||
| HGVSp | CE14696:p.Arg71= | ||||
| cDNA_position | 213 | ||||
| CDS_position | 213 | ||||
| Protein_position | 71 | ||||
| Exon_number | 1/6 | ||||
| Codon_change | cgC/cgT | ||||
| Amino_acid_change | R | ||||
| W08A12.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W08A12.1e.1:c.67-1268C>T | ||||
| Intron_number | 1/4 | ||||
| Reference | WBPaper00038208 | ||||
| Method | WGS_Yanai |
