WormBase Tree Display for Variation: WBVar00580616
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| WBVar00580616 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00580616 | |||
| Other_name | haw160751 | ||||
| cewivar00221420 | |||||
| Y50D4C.1b.1:c.343+704A>T | |||||
| Y50D4C.1d.1:c.355+704A>T | |||||
| Y50D4C.1a.1:c.385+704A>T | |||||
| Y50D4C.1c.1:c.385+704A>T | |||||
| HGVSg | CHROMOSOME_V:g.986179A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y50D4C | |
| Flanking_sequences | TTTTTTTTGAAAAATTTCAAAATTTCACTTTTTTTTTTTGGAAAATGGTT | AAAAAATTTCGTAGCTTAGAGAAAAAAAAAATTAAAATCTGAAAAAATTA | |||
| Mapping_target | Y50D4C | ||||
| Type_of_mutation | Substitution | a | t | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
| WGS_Yanai | |||||
| WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022902 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson4037 | ||||
| Analysis | WGS_Yanai | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006770 | |||
| Transcript | Y50D4C.1d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y50D4C.1d.1:c.355+704A>T | ||||
| Intron_number | 1/5 | ||||
| Y50D4C.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y50D4C.1a.1:c.385+704A>T | ||||
| Intron_number | 2/7 | ||||
| Y50D4C.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y50D4C.1b.1:c.343+704A>T | ||||
| Intron_number | 1/2 | ||||
| Y50D4C.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y50D4C.1c.1:c.385+704A>T | ||||
| Intron_number | 2/3 | ||||
| Reference | WBPaper00038208 | ||||
| Method | WGS_Yanai |
