WormBase Tree Display for Variation: WBVar00558543
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| WBVar00558543 | Name | Public_name | WBVar00558543 | ||
|---|---|---|---|---|---|
| Other_name | haw138678 | ||||
| cewivar00191053 | |||||
| C29F9.6.1:c.546T>C | |||||
| C29F9.6.2:c.546T>C | |||||
| CE43673:p.Ser182= | |||||
| C29F9.6.3:c.546T>C | |||||
| HGVSg | CHROMOSOME_III:g.116270T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | C29F9 | |
| Flanking_sequences | AAGGAGGACGCGAGGGCTGCTGAGCTTCAGATTTTTGAAGCAGCGGGGAG | AGGGATGAGTACTACCGCATGGTTGAGGAGCGAGCTCCCCGCGAGCAGGA | |||
| Mapping_target | C29F9 | ||||
| Type_of_mutation | Substitution | t | c | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| Person | WBPerson4037 | ||||
| Analysis | WGS_Yanai | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01387907 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00016221 | |||
| Transcript | C29F9.6.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C29F9.6.1:c.546T>C | ||||
| HGVSp | CE43673:p.Ser182= | ||||
| cDNA_position | 718 | ||||
| CDS_position | 546 | ||||
| Protein_position | 182 | ||||
| Exon_number | 7/9 | ||||
| Codon_change | agT/agC | ||||
| Amino_acid_change | S | ||||
| C29F9.6.3 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C29F9.6.3:c.546T>C | ||||
| HGVSp | CE43673:p.Ser182= | ||||
| cDNA_position | 641 | ||||
| CDS_position | 546 | ||||
| Protein_position | 182 | ||||
| Exon_number | 6/8 | ||||
| Codon_change | agT/agC | ||||
| Amino_acid_change | S | ||||
| C29F9.6.2 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C29F9.6.2:c.546T>C | ||||
| HGVSp | CE43673:p.Ser182= | ||||
| cDNA_position | 693 | ||||
| CDS_position | 546 | ||||
| Protein_position | 182 | ||||
| Exon_number | 5/7 | ||||
| Codon_change | agT/agC | ||||
| Amino_acid_change | S | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Yanai |
