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WormBase Tree Display for Variation: WBVar00538485

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Name Class

WBVar00538485NamePublic_nameWBVar00538485
Other_namehaw118620
LSJ2_26
oicr_ce108
cewivar00001022
C36F7.4a.1:c.-42+141A>G
C36F7.4a.2:c.-134+141A>G
C36F7.4e.1:c.229+141A>G
C36F7.4c.1:c.229+141A>G
C36F7.4g.1:c.229+141A>G
C36F7.4b.1:c.229+141A>G
HGVSgCHROMOSOME_I:g.9574008T>C
Sequence_detailsSMapS_parentSequenceC36F7
Flanking_sequencesGAAAAACTTTTTGGGAATTCAGTGAGTCTCTTGGATTCTTAGAGCTGCCTTCTTCGTTACAGCTCATTGTTAACTAATAATATCCCCTCCGCGCGAGAGT
Mapping_targetC36F7
Type_of_mutationSubstitutiontc
SeqStatusSequenced
Variation_typeSNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (208)
LaboratoryQX
CX
PersonWBPerson4037
WBPerson1730
AnalysisWGS_Yanai
WGS_McGrath
WGS_Stein
Million_mutation_project_reanalysis
WGS_Andersen
HistoryAcquires_mergeWBVar01432570
WBVar00601689
WBVar00601307
StatusLive
AffectsGeneWBGene00004372
TranscriptC36F7.4a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC36F7.4a.2:c.-134+141A>G
Intron_number1/11
C36F7.4g.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC36F7.4g.1:c.229+141A>G
Intron_number1/10
C36F7.4e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC36F7.4e.1:c.229+141A>G
Intron_number1/11
C36F7.4c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC36F7.4c.1:c.229+141A>G
Intron_number1/10
C36F7.4a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC36F7.4a.1:c.-42+141A>G
Intron_number1/10
C36F7.4b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC36F7.4b.1:c.229+141A>G
Intron_number1/10
ReferenceWBPaper00038208
WBPaper00040097
WBPaper00040707
MethodWGS_Yanai