WormBase Tree Display for Variation: WBVar00277164
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| WBVar00277164 | Evidence | Paper_evidence | WBPaper00036200 | ||
|---|---|---|---|---|---|
| Name | Public_name | ok5248 | |||
| Other_name | T02G5.15.3:c.-1590C>T | ||||
| T02G5.14.1:c.-853+1177C>T | |||||
| T02G5.15.2:c.-202+1177C>T | |||||
| T02G5.15.1:c.-29+1177C>T | |||||
| HGVSg | CHROMOSOME_II:g.7085771C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T02G5 | |
| Flanking_sequences | TTTGTGGGACTTCAAATTTACTGAGAAAAA | TTTTTTTGCGAGAAATTAAAATTTTCTGAG | |||
| Mapping_target | T02G5 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00033305 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| Analysis | Million_Mutation_Pilot_Project | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00020170 | |||
| WBGene00206521 | |||||
| Transcript | T02G5.15.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02G5.15.1:c.-29+1177C>T | ||||
| Intron_number | 1/6 | ||||
| T02G5.15.3 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02G5.15.3:c.-1590C>T | ||||
| cDNA_position | 512 | ||||
| Exon_number | 1/5 | ||||
| T02G5.15.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02G5.15.2:c.-202+1177C>T | ||||
| Intron_number | 1/5 | ||||
| T02G5.14.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02G5.14.1:c.-853+1177C>T | ||||
| Intron_number | 1/6 | ||||
| Isolation | Mutagen | ENU | |||
| Reference | WBPaper00036200 | ||||
| Remark | Allele identified through whole-genome sequencing by the Gene Knockout Consortium | Paper_evidence | WBPaper00036200 | ||
| Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||
| Method | KO_consortium_allele |
