WormBase Tree Display for Variation: WBVar00276756
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WBVar00276756 | Evidence | Paper_evidence | WBPaper00036200 | ||
---|---|---|---|---|---|
Name | Public_name | gk1412 | |||
Other_name | CE52749:p.Leu259= | ||||
F57F10.1b.1:c.68-433G>A | |||||
F57F10.1d.1:c.311-433G>A | |||||
F57F10.1b.2:c.68-433G>A | |||||
F57F10.1c.1:c.347-433G>A | |||||
F57F10.1e.1:c.777G>A | |||||
F57F10.1a.1:c.554-433G>A | |||||
HGVSg | CHROMOSOME_II:g.6150714G>A | ||||
Sequence_details | SMap | S_parent | Sequence | F57F10 | |
Flanking_sequences | TCGTGATTTTGACAGTGATACTCCGCCATT | GATACTCTCAGTTGGAGTAATGCTGGAAGT | |||
Mapping_target | F57F10 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00036969 | ||||
Laboratory | VC | ||||
Person | WBPerson427 | ||||
Analysis | Million_Mutation_Pilot_Project | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00019018 | |||
Transcript | F57F10.1d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F57F10.1d.1:c.311-433G>A | ||||
Intron_number | 3/17 | ||||
F57F10.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F57F10.1c.1:c.347-433G>A | ||||
Intron_number | 3/17 | ||||
F57F10.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F57F10.1a.1:c.554-433G>A | ||||
Intron_number | 2/17 | ||||
F57F10.1e.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F57F10.1e.1:c.777G>A | ||||
HGVSp | CE52749:p.Leu259= | ||||
cDNA_position | 3584 | ||||
CDS_position | 777 | ||||
Protein_position | 259 | ||||
Exon_number | 2/18 | ||||
Codon_change | ttG/ttA | ||||
Amino_acid_change | L | ||||
F57F10.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F57F10.1b.1:c.68-433G>A | ||||
Intron_number | 3/18 | ||||
F57F10.1b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F57F10.1b.2:c.68-433G>A | ||||
Intron_number | 2/17 | ||||
Isolation | Mutagen | EMS | |||
Reference | WBPaper00036200 | ||||
Remark | Allele identified through whole-genome sequencing by the Gene Knockout Consortium | Paper_evidence | WBPaper00036200 | ||
Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||
Method | KO_consortium_allele |