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WormBase Tree Display for Variation: WBVar00276756

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Name Class

WBVar00276756EvidencePaper_evidenceWBPaper00036200
NamePublic_namegk1412
Other_nameCE52749:p.Leu259=
F57F10.1b.1:c.68-433G>A
F57F10.1d.1:c.311-433G>A
F57F10.1b.2:c.68-433G>A
F57F10.1c.1:c.347-433G>A
F57F10.1e.1:c.777G>A
F57F10.1a.1:c.554-433G>A
HGVSgCHROMOSOME_II:g.6150714G>A
Sequence_detailsSMapS_parentSequenceF57F10
Flanking_sequencesTCGTGATTTTGACAGTGATACTCCGCCATTGATACTCTCAGTTGGAGTAATGCTGGAAGT
Mapping_targetF57F10
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00036969
LaboratoryVC
PersonWBPerson427
AnalysisMillion_Mutation_Pilot_Project
KO_consortium_allele
StatusLive
AffectsGeneWBGene00019018
TranscriptF57F10.1d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF57F10.1d.1:c.311-433G>A
Intron_number3/17
F57F10.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF57F10.1c.1:c.347-433G>A
Intron_number3/17
F57F10.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF57F10.1a.1:c.554-433G>A
Intron_number2/17
F57F10.1e.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF57F10.1e.1:c.777G>A
HGVSpCE52749:p.Leu259=
cDNA_position3584
CDS_position777
Protein_position259
Exon_number2/18
Codon_changettG/ttA
Amino_acid_changeL
F57F10.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF57F10.1b.1:c.68-433G>A
Intron_number3/18
F57F10.1b.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF57F10.1b.2:c.68-433G>A
Intron_number2/17
IsolationMutagenEMS
ReferenceWBPaper00036200
RemarkAllele identified through whole-genome sequencing by the Gene Knockout ConsortiumPaper_evidenceWBPaper00036200
Sequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele