WormBase Tree Display for Variation: WBVar00276216
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| WBVar00276216 | Evidence | Paper_evidence | WBPaper00036200 | ||
|---|---|---|---|---|---|
| Name | Public_name | gk2878 | |||
| Other_name | E01F3.1c.1:c.292-46C>T | ||||
| E01F3.1h.1:c.292-46C>T | |||||
| E01F3.1i.1:c.604-46C>T | |||||
| E01F3.1j.1:c.445-46C>T | |||||
| E01F3.1b.1:c.445-46C>T | |||||
| E01F3.1f.1:c.304-46C>T | |||||
| E01F3.1e.1:c.604-46C>T | |||||
| E01F3.1g.1:c.304-46C>T | |||||
| HGVSg | CHROMOSOME_II:g.14945171C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | E01F3 | |
| Flanking_sequences | TTCCAGATAAAATTATAAAAATCAGAAAAG | CTCTAGATTCATCAATTTTTGTTTCTAATT | |||
| Mapping_target | E01F3 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00005866 | ||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| Analysis | Million_Mutation_Pilot_Project | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00008443 | |||
| Transcript | E01F3.1f.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1f.1:c.304-46C>T | ||||
| Intron_number | 2/10 | ||||
| E01F3.1h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1h.1:c.292-46C>T | ||||
| Intron_number | 2/11 | ||||
| E01F3.1j.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1j.1:c.445-46C>T | ||||
| Intron_number | 3/11 | ||||
| E01F3.1g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1g.1:c.304-46C>T | ||||
| Intron_number | 3/12 | ||||
| E01F3.1i.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1i.1:c.604-46C>T | ||||
| Intron_number | 4/12 | ||||
| E01F3.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1b.1:c.445-46C>T | ||||
| Intron_number | 5/14 | ||||
| E01F3.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1c.1:c.292-46C>T | ||||
| Intron_number | 2/11 | ||||
| E01F3.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1e.1:c.604-46C>T | ||||
| Intron_number | 4/12 | ||||
| Isolation | Mutagen | EMS | |||
| Reference | WBPaper00036200 | ||||
| Remark | Allele identified through whole-genome sequencing by the Gene Knockout Consortium | Paper_evidence | WBPaper00036200 | ||
| Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||
| Method | KO_consortium_allele |
