WormBase Tree Display for Variation: WBVar00272056
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WBVar00272056 | Evidence | Paper_evidence | WBPaper00005369 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00272056 | |||
Other_name | uCE5-1396 | ||||
F26F12.3b.2:c.2337-209del | |||||
F26F12.3b.1:c.2337-209del | |||||
F26F12.3b.3:c.2337-209del | |||||
F26F12.3a.1:c.2592-209del | |||||
F26F12.3c.1:c.1866-209del | |||||
HGVSg | CHROMOSOME_V:g.5840122del | ||||
Sequence_details | SMap | S_parent | Sequence | F26F12 | |
Flanking_sequences | CCATTGAAAGAGGGCGTTTGAAATAGGCCACTACATAAATTCAGCAGCAGAGGGAAACTTTTAGAAAAAAGTTCTAAAGAATCTAAATCTAGAAAAAAAA | CATCTAAAACTAAATCTAGAATCTAAAAATTCTCCAGTGCATAATTTCACAATTTTAGAGGCTCTTAAAATTTCTCTCACTGTTGATTTTCGTGTCTGAG | |||
Mapping_target | F26F12 | ||||
Type_of_mutation | Deletion | A | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
Analysis | SNP_Swan | ||||
Status | Live | ||||
Affects | Gene | WBGene00017834 | |||
Transcript | F26F12.3b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3b.1:c.2337-209del | ||||
Intron_number | 5/6 | ||||
F26F12.3b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3b.2:c.2337-209del | ||||
Intron_number | 5/6 | ||||
F26F12.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3a.1:c.2592-209del | ||||
Intron_number | 5/6 | ||||
F26F12.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3c.1:c.1866-209del | ||||
Intron_number | 5/6 | ||||
F26F12.3b.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3b.3:c.2337-209del | ||||
Intron_number | 4/5 | ||||
Reference | WBPaper00005369 | ||||
Method | SNP_Swan |