WormBase Tree Display for Variation: WBVar00252236

WBVar00252236 Name: Public_name: tm3585
    Other_name: F40F8.9.1:c.70_273del
      CE05848:p.Val24_Gln91del
    HGVSg: CHROMOSOME_II:g.11127022_11127225del
  Sequence_details: SMap: S_parent: Sequence: F40F8
    Flanking_sequences: ttgttcgagcagcttgacaaaaaattatta gtttttaaatgatttttctataatctatct
    Mapping_target: F40F8
    Source_location: 7 CHROMOSOME_II 11127021 11127226 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3585_external
      tm3585_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004795
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3585
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003076
    Transcript: F40F8.9.1 VEP_consequence: inframe_deletion,splice_region_variant
        VEP_impact: MODERATE
        HGVSc: F40F8.9.1:c.70_273del
        HGVSp: CE05848:p.Val24_Gln91del
        cDNA_position: 73-276
        CDS_position: 70-273
        Protein_position: 24-91
        Exon_number: 2/4
        Codon_change: GTTGTTCTCCGCGACGGACGGAAATTGATTGGCTTCTTGAGATCGATAGATCAATTTGCCAATCTTATATTGGAAGATGTCGTAGAACGCACATTTGTTGAGAAATACTTCTGTGAAACGGGTCAAGGATTCATGCTTATTCGCGGAGAGAATGTTGAGCTTGCTGGAGAAATCGATGATACCATTGAGACTGGACTTACGCAG/-
        Amino_acid_change: VVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQGFMLIRGENVELAGEIDDTIETGLTQ/-
    Interactor: WBInteraction000532916
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype (15)
  Reference: WBPaper00047010
  Remark (2)
  Method: NBP_knockout_allele