WormBase Tree Display for Variation: WBVar00252027

WBVar00252027 Name: Public_name: tm3308
    Other_name: R04F11.2.3:c.1-81_116-8del
    HGVSg: CHROMOSOME_V:g.12318546_12318916del
  Sequence_details: SMap: S_parent: Sequence: R04F11
    Flanking_sequences: atacggggaacgttatttggtttacttgaa ttttcaggatttttccgtcttcgccagatt
    Mapping_target: R04F11
    Source_location: 7 CHROMOSOME_V 12318545 12318917 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3308_external
      tm3308_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3308
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00011015
    Transcript: R04F11.2.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/3
        Exon_number: 1/4
      R04F11.2.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R04F11.2.3:c.1-81_116-8del
        Intron_number: 1-2/4
        Exon_number: 2/5
      R04F11.2.2 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/3
        Exon_number: 1/4
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype: WBPhenotype:0000050 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. H-S. Koo: Emb Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 10560/10561-10931/10932 (371 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele