WormBase Tree Display for Variation: WBVar00251698

WBVar00251698 Name: Public_name: tm2877
    Other_name: C43H6.9b.1:c.1881_2244-26delinsAAGGAAGCGCATCAGAGAG
      C43H6.9a.2:c.1239_1602-26delinsAAGGAAGCGCATCAGAGAG
      C43H6.9a.1:c.1239_1602-26delinsAAGGAAGCGCATCAGAGAG
    HGVSg: CHROMOSOME_X:g.2414996_2415478delinsCTCTCTGATGCGCTTCCTT
  Sequence_details: SMap: S_parent: Sequence: C43H6
    Flanking_sequences: aaattctgcaagactccttgttttttgaat tacgtctctgatgcgcttcctttaattggt
    Mapping_target: C43H6
    Source_location: 7 CHROMOSOME_X 2414995 2415479 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: CTCTCTGATGCGCTTCCTT
      Deletion
    PCR_product: tm2877_external
      tm2877_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2877
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00001618
    Transcript: C43H6.9a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C43H6.9a.1:c.1239_1602-26delinsAAGGAAGCGCATCAGAGAG
        cDNA_position: 1332-?
        CDS_position: 1239-?
        Protein_position: 413-?
        Intron_number: 9-11/13
        Exon_number: 9-11/14
      C43H6.9a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C43H6.9a.2:c.1239_1602-26delinsAAGGAAGCGCATCAGAGAG
        cDNA_position: 1478-?
        CDS_position: 1239-?
        Protein_position: 413-?
        Intron_number: 12-14/16
        Exon_number: 12-14/17
      C43H6.9b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C43H6.9b.1:c.1881_2244-26delinsAAGGAAGCGCATCAGAGAG
        cDNA_position: 1881-?
        CDS_position: 1881-?
        Protein_position: 627-?
        Intron_number: 12-14/15
        Exon_number: 12-14/16
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000478 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the National Bioresource Project of Japan from Dr. I. Mori: normal thermotaxis at 20C. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: IK
      WBPhenotype:0001182 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. K. Ashrafi: wild-type Nile Red staining. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KQ
  Remark: 19770/19771-CTCTCTGATGCGCTTCCTT-20253/20254 (483 bp deletion + 19 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele