WormBase Tree Display for Variation: WBVar00251493

WBVar00251493 Name: Public_name: tm2644
    Other_name: F56A3.2.1:c.816-153_867del
    HGVSg: CHROMOSOME_I:g.5185147_5185351del
  Sequence_details: SMap: S_parent: Sequence: F56A3
    Flanking_sequences: aactttcatcgaggcttcattgtatccaat ctcacttttcgatggctgattacggtaatt
    Mapping_target: F56A3
    Source_location: 7 CHROMOSOME_I 5185146 5185352 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2644_external
      tm2644_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00034680
      WBStrain00034681
      WBStrain00034683
      WBStrain00034698
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2644
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00018909
    Transcript: F56A3.2.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F56A3.2.1:c.816-153_867del
        cDNA_position: ?-867
        CDS_position: ?-867
        Protein_position: ?-289
        Intron_number: 4/8
        Exon_number: 5/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0001781 Paper_evidence: WBPaper00041482
        Curator_confirmed: WBPerson113
        Remark: shows hypersensitivity to UVC, nitrogen mustard, camptothecin Paper_evidence: WBPaper00041482
            Curator_confirmed: WBPerson113
        Affected_by: Molecule: WBMol:00005119 Paper_evidence: WBPaper00041482
              Curator_confirmed: WBPerson113
            WBMol:00001694 Paper_evidence: WBPaper00041482
              Curator_confirmed: WBPerson113
      WBPhenotype:0002086 Paper_evidence: WBPaper00041482
        Curator_confirmed: WBPerson113
        Remark: shows unbiassed distribution of crossover formation during meiosis. Paper_evidence: WBPaper00041482
            Curator_confirmed: WBPerson113
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Reference: WBPaper00041482
  Remark: 14117/14118-14322/14323 (205 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele