WormBase Tree Display for Variation: WBVar00250944

WBVar00250944 Name: Public_name: tm1984
    HGVSg: CHROMOSOME_I:g.4651984_4653585del
  Sequence_details: SMap: S_parent: Sequence: B0041
    Flanking_sequences: gcggcggaaagaggacagtggaattggaat attatttttcaggcaatgatccgaattatc
    Mapping_target: B0041
    Source_location: 7 CHROMOSOME_I 4651983 4653586 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1984_external
      tm1984_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00024115
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1984
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00015007
      WBGene00015010
    Transcript: B0041.6b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-2/2
        Exon_number: 1-3/3
      B0041.2e.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2/10
        Exon_number: 1-2/11
      B0041.2f.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2/10
        Exon_number: 1-2/11
      B0041.6a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-2/3
        Exon_number: 1-4/4
      B0041.2d.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/8
        Exon_number: 1/9
      B0041.2a.1 VEP_consequence: splice_donor_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/10
        Exon_number: 1/11
      B0041.2b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2/10
        Exon_number: 1-2/11
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
    Mapping_data: In_multi_point: 5492
  Description: Phenotype: WBPhenotype:0000224 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. C. Loer to the National Bioresource Project of Japan: the same phenotype as cat-4; serotonin deficient and bleach hypersensitive. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: LC
      WBPhenotype:0000586 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. C. Loer to the National Bioresource Project of Japan: the same phenotype as cat-4; serotonin deficient and bleach hypersensitive. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: LC
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 8846/8847-10448/10449 (1602 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele