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WormBase Tree Display for Variation: WBVar00250862

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Name Class

WBVar00250862NamePublic_nametm1899
Other_nameCE53599:p.Gln255_Val383del
T13H2.4a.1:c.49+1193_50-1363del
T13H2.4d.1:c.49+1193_50-1363del
T13H2.4c.1:c.759_1145del
T13H2.4f.1:c.-901_-515del
CE53664:p.Gln255_Val383del
T13H2.4b.1:c.759_1145del
HGVSgCHROMOSOME_X:g.4617976_4618362del
Sequence_detailsSMapS_parentSequenceT13H2
Flanking_sequencestcaattttcatcgatccctcaatactgacgaaaatcgtttgacgtgggagacgatgcaac
Mapping_targetT13H2
Source_location7CHROMOSOME_X46179754618363Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm1899_external
tm1899_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq1899
NBP_allele
StatusLive
AffectsGeneWBGene00004148
TranscriptT13H2.4c.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScT13H2.4c.1:c.759_1145del
HGVSpCE53664:p.Gln255_Val383del
cDNA_position787-1173
CDS_position759-1145
Protein_position253-382
Exon_number5/17
Codon_changettTGTACAAAACTCTACAGTTAGGCTCGAGTATTCTTCTTCTGAGTCTCCTTCAAATAACAATAATTGTTGTGATGCTCAAAATGATAGAGGGCACTTTGGAATGTCTCGTTTTTTGGAAAATAACACCAATGAACATAATGCAACAGGGATTTCTAGTTTCTTCTTAGAAAAAGATAGTGCTCCTAATCCTGAAGACTCAACACCATCTGTTTTAAACCGGGAAGATGCATCTTGCACAACACAAAAAACGAGAAACAGTTTCGAAGAATGCGTTGTTAATCCTGCATTAGTGCTGGCTGCAGTGAACAGAGTGTCGACACCTGCCACACCTGTCCATAATGACGTGGGTCCTCCAGTGGTCTTTTCAGAAACCGCGAACAAAGCTGTc/ttc
Amino_acid_changeFVQNSTVRLEYSSSESPSNNNNCCDAQNDRGHFGMSRFLENNTNEHNATGISSFFLEKDSAPNPEDSTPSVLNREDASCTTQKTRNSFEECVVNPALVLAAVNRVSTPATPVHNDVGPPVVFSETANKAV/F
T13H2.4a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT13H2.4a.1:c.49+1193_50-1363del
Intron_number2/13
T13H2.4d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT13H2.4d.1:c.49+1193_50-1363del
Intron_number2/13
T13H2.4f.1VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScT13H2.4f.1:c.-901_-515del
cDNA_position712-1098
Exon_number3/16
T13H2.4b.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScT13H2.4b.1:c.759_1145del
HGVSpCE53599:p.Gln255_Val383del
cDNA_position791-1177
CDS_position759-1145
Protein_position253-382
Exon_number5/17
Codon_changettTGTACAAAACTCTACAGTTAGGCTCGAGTATTCTTCTTCTGAGTCTCCTTCAAATAACAATAATTGTTGTGATGCTCAAAATGATAGAGGGCACTTTGGAATGTCTCGTTTTTTGGAAAATAACACCAATGAACATAATGCAACAGGGATTTCTAGTTTCTTCTTAGAAAAAGATAGTGCTCCTAATCCTGAAGACTCAACACCATCTGTTTTAAACCGGGAAGATGCATCTTGCACAACACAAAAAACGAGAAACAGTTTCGAAGAATGCGTTGTTAATCCTGCATTAGTGCTGGCTGCAGTGAACAGAGTGTCGACACCTGCCACACCTGTCCATAATGACGTGGGTCCTCCAGTGGTCTTTTCAGAAACCGCGAACAAAGCTGTc/ttc
Amino_acid_changeFVQNSTVRLEYSSSESPSNNNNCCDAQNDRGHFGMSRFLENNTNEHNATGISSFFLEKDSAPNPEDSTPSVLNREDASCTTQKTRNSFEECVVNPALVLAAVNRVSTPATPVHNDVGPPVVFSETANKAV/F
IsolationMutagenTMP/UV
GeneticsMapX
DescriptionPhenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as homozygous viable by the National BioResource Project of Japan. Comment from Dr. B.J. Meyers to the National Bioresource Project of Japan: Homozygous viable.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
WBPhenotype:0000886Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment from Dr. B.J. Meyers to the National Bioresource Project of Japan: no obvious phenotypes in single mutants.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Remark24799/24800-25186/25187 (387 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele