WormBase Tree Display for Variation: WBVar00250843

WBVar00250843 Name: Public_name: tm1880
    Other_name: D1009.4.1:c.74_380+156delinsGGTCGGAAATGC
    HGVSg: CHROMOSOME_X:g.8918315_8918975delinsGCATTTCCGACC
  Sequence_details: SMap: S_parent: Sequence: D1009
    Flanking_sequences: actttcttttgtcattttcattccgactga cgagcgcacgtcgcgggcgtcctgtaattc
    Mapping_target: D1009
    Source_location: 7 CHROMOSOME_X 8918314 8918976 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: GCATTTCCGACC
      Deletion
    PCR_product: tm1880_external
      tm1880_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1880
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003752
    Transcript: D1009.4.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: D1009.4.1:c.74_380+156delinsGGTCGGAAATGC
        cDNA_position: 105-?
        CDS_position: 74-?
        Protein_position: 25-?
        Intron_number: 3-5/6
        Exon_number: 3-5/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
    Mapping_data: In_multi_point: 5128
  Description: Phenotype (15)
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Reference: WBPaper00043908
  Remark: 17382/17383-GCATTTCCGACC-18043/18044 (661 bp deletion + 12 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele