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WormBase Tree Display for Variation: WBVar00250711

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Name Class

WBVar00250711NamePublic_nametm1746
Other_nameB0414.5.1:c.435_1002del
CE41548:p.Ser146AspfsTer12
HGVSgCHROMOSOME_I:g.5790675_5791242del
Sequence_detailsSMapS_parentSequenceB0414
Flanking_sequencescccatttgacggagccaaatttgattgtccttctttgtagttcttgaagatccaaaaata
Mapping_targetB0414
Source_location7CHROMOSOME_I57906745791243Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm1746_external
tm1746_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq1746
NBP_allele
StatusLive
AffectsGeneWBGene00000772
TranscriptB0414.5.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScB0414.5.1:c.435_1002del
HGVSpCE41548:p.Ser146AspfsTer12
cDNA_position464-1031
CDS_position435-1002
Protein_position145-334
Exon_number3/8
Codon_changeaaGTCTATCGACTCGGAAAGAAATTCACAGCGTAAGAAATCTGCTCGGCGACTAAATTTCGAGAGAGACGCAGAGCAAAAGAAGGATTCAACAAAAACAAATAATAGTTCATTCGTTGCTGAAATGACTAGAGAATATGAGAAGATAGTTATCTCGAAGGGTGCTCCCGTTCCAATCAATAAGGCAAATCGGAATCTCTACCGTAATCCTCGTGGTTCCCTTGAGACTCCTACAGATTCTCCGCAAAAAGGCTTCAGCAGTTCAACCGAATCGTCTCCTTCTGACAGTATGAATCAGTTTCCATCTCGAGAGCACTTCACATCTGCAAATGAGGAATCTCCGATGAAAAGAAAAAACTTCCAACAAGAACATGGAAATAAAAACCGTGATAGCGACGCAACTTGGTTTGGAGAGCTTCCGCCCAGAGATTATACAAGTCCAACATTCTCACGGAAGATATTTGTTGGAGGAGTTCCATGGGATATCACTGAGGCAGCTTTAAAAGATTCATTTGGAGAATTTGGTTCGTGTGCAGTTGAATGGCCTGGACAAGAAGCACGTTATCGCAGT/aa
Amino_acid_changeKSIDSERNSQRKKSARRLNFERDAEQKKDSTKTNNSSFVAEMTREYEKIVISKGAPVPINKANRNLYRNPRGSLETPTDSPQKGFSSSTESSPSDSMNQFPSREHFTSANEESPMKRKNFQQEHGNKNRDSDATWFGELPPRDYTSPTFSRKIFVGGVPWDITEAALKDSFGEFGSCAVEWPGQEARYRS/X
IsolationMutagenTMP/UV
GeneticsMapI
Mapping_dataIn_multi_point5090
DescriptionPhenotypeWBPhenotype:0000154Paper_evidenceWBPaper00027619
Curator_confirmedWBPerson2021
RemarkReduced brood size especially at high temperaturePaper_evidenceWBPaper00027619
Curator_confirmedWBPerson2021
RecessivePaper_evidenceWBPaper00027619
Curator_confirmedWBPerson2021
Phenotype_assayTemperature20C, 25CPaper_evidenceWBPaper00027619
Curator_confirmedWBPerson2021
WBPhenotype:0000183Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
RemarkComment to the National Bioresource Project of Japan: Dr. M. Hengartner, Dr. D. Greenstein: increased germ cell apoptosis.Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
Laboratory_evidenceWS
DG
EQ_annotationsAnatomy_termWBbt:0006796PATO:0000460Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
Phenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
RemarkComment from Dr. J. Kimble to the National Bioresource Project of Japan: homozygotes are viable.Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
Laboratory_evidenceJK
FX
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
RemarkComment from Dr. J. Kimble to the National Bioresource Project of Japan: homozygotes are fertile.Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
Laboratory_evidenceJK
ReferenceWBPaper00027619
Remark19085/19086-19653/19654 (568 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele