WormBase Tree Display for Variation: WBVar00250540

WBVar00250540 Name: Public_name: tm1553
    Other_name: C56G3.1a.1:c.70_291+27del
      C56G3.1b.1:c.130_351+27del
      C56G3.1a.2:c.70_291+27del
    HGVSg: CHROMOSOME_X:g.7386029_7386327del
  Sequence_details: SMap: S_parent: Sequence: C56G3
    Flanking_sequences: atcagtccgaatgcatccaattatctcacg tttgtcttttgtttatacgtctcttttcca
    Mapping_target: C56G3
    Source_location: 7 CHROMOSOME_X 7386028 7386328 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1553_external
      tm1553_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1553
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00016984
    Transcript: C56G3.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C56G3.1b.1:c.130_351+27del
        cDNA_position: 130-?
        CDS_position: 130-?
        Protein_position: 44-?
        Intron_number: 2-3/8
        Exon_number: 2-3/9
      C56G3.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C56G3.1a.1:c.70_291+27del
        cDNA_position: 147-?
        CDS_position: 70-?
        Protein_position: 24-?
        Intron_number: 3-4/10
        Exon_number: 3-4/11
      C56G3.1a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C56G3.1a.2:c.70_291+27del
        cDNA_position: 81-?
        CDS_position: 70-?
        Protein_position: 24-?
        Intron_number: 2-3/9
        Exon_number: 2-3/10
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000164 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0001265 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0001309 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002285 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002287 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002288 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002292 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002314 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000176 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to National Bioresournce Project of Japan from Dr. L. Avery: satiety behavior normal. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000659 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to National Bioresournce Project of Japan from Dr. L. Avery: feeding behavior normal. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Reference: WBPaper00043908
  Remark: 22624/22625-22923/22924 (299 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele