WormBase Tree Display for Variation: WBVar00250415

WBVar00250415 Name: Public_name: tm1422
    Other_name: B0410.2b.1:c.194_633+45del
      B0410.2a.1:c.194_642+45del
    HGVSg: CHROMOSOME_X:g.2886877_2887472del
  Sequence_details: SMap: S_parent: Sequence: B0410
    Flanking_sequences: agattgcaccacctaacgaagactgggcag tttttgggatttttttgctggcttttttta
    Mapping_target: B0410
    Source_location: 7 CHROMOSOME_X 2886876 2887473 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1422_external
      tm1422_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1422
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00015171
    Transcript: B0410.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0410.2b.1:c.194_633+45del
        cDNA_position: 194-?
        CDS_position: 194-?
        Protein_position: 65-?
        Intron_number: 2-4/7
        Exon_number: 2-4/8
      B0410.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0410.2a.1:c.194_642+45del
        cDNA_position: 208-?
        CDS_position: 194-?
        Protein_position: 65-?
        Intron_number: 3-5/9
        Exon_number: 3-5/10
    Interactor: WBInteraction000505056
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
    Mapping_data: In_multi_point: 5098
  Description: Phenotype: WBPhenotype:0000061 Paper_evidence: WBPaper00040810
        Curator_confirmed: WBPerson12968
      WBPhenotype:0001384 Paper_evidence: WBPaper00040810
        Curator_confirmed: WBPerson12968
      WBPhenotype:0001663 Paper_evidence: WBPaper00040810
        Curator_confirmed: WBPerson12968
      WBPhenotype:0002490 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. A. Colavita: ectopic VC axons. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: OU
        EQ_annotations: Anatomy_term: WBbt:0005304 PATO:0000460 Person_evidence: WBPerson7743
                Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000050 Paper_evidence: WBPaper00040810
        Curator_confirmed: WBPerson12968
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000469 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. G. Garriga: no obvious HSN or Q neuroblast migration defects. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: NG
      WBPhenotype:0000470 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. G. Garriga: no obvious HSN or Q neuroblast migration defects. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: NG
      WBPhenotype:0000729 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. C. Yang: normal cell death phenotype. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FU
      WBPhenotype:0001225 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. H. Sawa: no Psa phenotype. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: HS
  Reference: WBPaper00040810
  Remark: 1420/1421-2016/2017 (596 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele