WormBase Tree Display for Variation: WBVar00250328

WBVar00250328 Name: Public_name: tm1330
    HGVSg: CHROMOSOME_III:g.5208807_5209258del
  Sequence_details: SMap: S_parent: Sequence: ZC155
    Flanking_sequences: gcatttgaacgtaaaagcataaaaacttct tcaagtgttttcatattatttcgctttagt
    Mapping_target: ZC155
    Source_location: 7 CHROMOSOME_III 5208806 5209259 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1330_external
      tm1330_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1330
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00022534
    Transcript: ZC155.7.2 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-79
        CDS_position: ?-77
        Protein_position: ?-26
        Exon_number: 1-2/7
      ZC155.7.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-256
        CDS_position: ?-77
        Protein_position: ?-26
        Intron_number: 1/6
        Exon_number: 1-2/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 10436/10437-10888/10889 (452 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele