WormBase Tree Display for Variation: WBVar00249371

WBVar00249371 Name: Public_name: tm323
    Other_name: B0523.3.1:c.1101+463_1102-867delinsTCACCGTCATCAACGCTTGAATAGTGGCTGAGCATTTGTTGAATA
      B0523.3.2:c.1101+463_1102-867delinsTCACCGTCATCAACGCTTGAATAGTGGCTGAGCATTTGTTGAATA
      B0523.1:n.306_1135+3delinsTATTCAACAAATGCTCAGCCACTATTCAAGCGTTGATGACGGTGA
    HGVSg: CHROMOSOME_III:g.8672387_8673266delinsTATTCAACAAATGCTCAGCCACTATTCAAGCGTTGATGACGGTGA
  Sequence_details: SMap: S_parent: Sequence: B0523
    Flanking_sequences: cacgattcaacaaatgctcagccactatca gttggtagtgaatcaatatgatatggtgca
    Mapping_target: B0523
    Source_location: 7 CHROMOSOME_III 8672386 8673268 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TATTCAACAAATGCTCAGCCACTATTCAAGCGTTGATGACGGTGAA
      Deletion
    PCR_product: tm323_external
      tm323_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 323
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002212
      WBGene00003993
    Transcript: B0523.3.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: B0523.3.1:c.1101+463_1102-867delinsTCACCGTCATCAACGCTTGAATAGTGGCTGAGCATTTGTTGAATA
        Intron_number: 6/8
      B0523.3.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: B0523.3.2:c.1101+463_1102-867delinsTCACCGTCATCAACGCTTGAATAGTGGCTGAGCATTTGTTGAATA
        Intron_number: 7/9
    Pseudogene: B0523.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,non_coding_transcript_exon_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0523.1:n.306_1135+3delinsTATTCAACAAATGCTCAGCCACTATTCAAGCGTTGATGACGGTGA
        cDNA_position: 306-?
        Intron_number: 2-3/4
        Exon_number: 2-3/5
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 6306/6307-TATTCAACAAATGCTCAGCCACTATTCAAGCGTTGATGACGGTGAA -7187/7188 (881 bp deletion + 46 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele