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WormBase Tree Display for Variation: WBVar00249317

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Name Class

WBVar00249317NamePublic_nametm265
Other_nameT26C11.7.1:c.1182_*424del
HGVSgCHROMOSOME_X:g.1853981_1854423del
Sequence_detailsSMapS_parentSequenceT26C11
Flanking_sequencesattttgaactgagcatctgaaaaatgtgttcccggttgattgtgatcaatggcgtgttcg
Mapping_targetT26C11
Source_location7CHROMOSOME_X18539801854424Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm265_external
tm265_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq265
NBP_allele
StatusLive
AffectsGeneWBGene00000460
TranscriptT26C11.7.1VEP_consequencestop_lost,3_prime_UTR_variant
VEP_impactHIGH
HGVScT26C11.7.1:c.1182_*424del
cDNA_position1285-1727
CDS_position1182-?
Protein_position394-?
Exon_number6-7/7
IsolationMutagenTMP/UV
GeneticsMapX
DescriptionPhenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
RemarkClassified as 'homozygous viable' by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
Laboratory_evidenceFX
WBPhenotype:0000070Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
RemarkComment from Dr. D. Portman to the National Bioresource Project of Japan: male tail is morphologically wile-type.Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
Remark18501/18502-18944/18945 (443 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele