WormBase Tree Display for Variation: WBVar00248986
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| WBVar00248986 | Name | Public_name | sy428 | ||||
|---|---|---|---|---|---|---|---|
| Other_name | CE38269:p.Arg180Ter | ||||||
| CE08039:p.Arg180Ter | |||||||
| CE38270:p.Arg180Ter | |||||||
| C09E10.2d.1:c.538C>T | |||||||
| C09E10.2e.1:c.538C>T | |||||||
| C09E10.2b.1:c.538C>T | |||||||
| C09E10.2c.1:c.538C>T | |||||||
| CE08038:p.Arg180Ter | |||||||
| C09E10.2a.1:c.538C>T | |||||||
| CE38268:p.Arg180Ter | |||||||
| HGVSg | CHROMOSOME_X:g.989709G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | C09E10 | |||
| Flanking_sequences | tgcttctcaacggaatgccttgccggaatg | gatgtgaatggtgtggtcagacggttagtt | |||||
| Mapping_target | C09E10 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00024616 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00030867 | ||||||
| Laboratory | PS | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00000958 | |||||
| Transcript | C09E10.2d.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | C09E10.2d.1:c.538C>T | ||||||
| HGVSp | CE38269:p.Arg180Ter | ||||||
| cDNA_position | 538 | ||||||
| CDS_position | 538 | ||||||
| Protein_position | 180 | ||||||
| Exon_number | 4/14 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| C09E10.2c.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C09E10.2c.1:c.538C>T | ||||||
| HGVSp | CE38268:p.Arg180Ter | ||||||
| cDNA_position | 538 | ||||||
| CDS_position | 538 | ||||||
| Protein_position | 180 | ||||||
| Exon_number | 4/14 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| C09E10.2a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C09E10.2a.1:c.538C>T | ||||||
| HGVSp | CE08038:p.Arg180Ter | ||||||
| cDNA_position | 681 | ||||||
| CDS_position | 538 | ||||||
| Protein_position | 180 | ||||||
| Exon_number | 5/18 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| C09E10.2e.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C09E10.2e.1:c.538C>T | ||||||
| HGVSp | CE38270:p.Arg180Ter | ||||||
| cDNA_position | 538 | ||||||
| CDS_position | 538 | ||||||
| Protein_position | 180 | ||||||
| Exon_number | 4/15 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| C09E10.2b.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C09E10.2b.1:c.538C>T | ||||||
| HGVSp | CE08039:p.Arg180Ter | ||||||
| cDNA_position | 681 | ||||||
| CDS_position | 538 | ||||||
| Protein_position | 180 | ||||||
| Exon_number | 5/18 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| Interactor | WBInteraction000518038 | ||||||
| WBInteraction000542426 | |||||||
| WBInteraction000542430 | |||||||
| WBInteraction000542434 | |||||||
| WBInteraction000542438 | |||||||
| Genetics | Interpolated_map_position | X | -18.8693 | ||||
| Description (2) | |||||||
| Reference | WBPaper00038270 | ||||||
| WBPaper00032082 | |||||||
| WBPaper00004721 | |||||||
| WBPaper00016916 | |||||||
| WBPaper00050796 | |||||||
| WBPaper00065340 | |||||||
| WBPaper00065992 | |||||||
| Method | Substitution_allele |
