WormBase Tree Display for Variation: WBVar00248942
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WBVar00248942 | Evidence | Paper_evidence | WBPaper00003566 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | sy217 | |||||
Other_name | C09H6.2b.1:c.139C>T | ||||||
C09H6.2a.1:c.139C>T | |||||||
CE27060:p.Gln47Ter | |||||||
CE15610:p.Gln47Ter | |||||||
HGVSg | CHROMOSOME_I:g.8119175G>A | ||||||
Sequence_details | SMap | S_parent | Sequence | C09H6 | |||
Flanking_sequences | gccggtggtggtgggggaggagagcaacaa | aagtcccatttcgttagttttacaagagatt | |||||
Mapping_target | C09H6 | ||||||
Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00003566 | ||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Laboratory | PS | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00002999 | |||||
Transcript | C09H6.2b.1 | VEP_consequence | stop_gained | ||||
VEP_impact | HIGH | ||||||
HGVSc | C09H6.2b.1:c.139C>T | ||||||
HGVSp | CE27060:p.Gln47Ter | ||||||
cDNA_position | 142 | ||||||
CDS_position | 139 | ||||||
Protein_position | 47 | ||||||
Exon_number | 2/17 | ||||||
Codon_change | Caa/Taa | ||||||
Amino_acid_change | Q/* | ||||||
C09H6.2a.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | C09H6.2a.1:c.139C>T | ||||||
HGVSp | CE15610:p.Gln47Ter | ||||||
cDNA_position | 140 | ||||||
CDS_position | 139 | ||||||
Protein_position | 47 | ||||||
Exon_number | 2/18 | ||||||
Codon_change | Caa/Taa | ||||||
Amino_acid_change | Q/* | ||||||
Interactor | WBInteraction000555590 | ||||||
WBInteraction000555591 | |||||||
Genetics | Interpolated_map_position | I | 2.55966 | ||||
Description (2) | |||||||
Reference | WBPaper00003566 | ||||||
Method | Substitution_allele |