WormBase Tree Display for Variation: WBVar00248295
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WBVar00248295 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00248295 | |||
Other_name | snp_Y105E8A[1] | ||||
F49B2.6.1:c.2146+143C>T | |||||
HGVSg | CHROMOSOME_I:g.14336420C>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y105E8A | |
Flanking_sequences | atgataagaatggtatgcggtatctgaatagttataggtagtcttgagtagttctaggtaatcctgggtagttctaggtagtactgagtagttctaggtagtcctgagtagttctaggtagtcctgagtagttccaggtagtcctgagtagttc | acgtagttctatgtagcccgtagtc | |||
Mapping_target | Y105E8A | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00009865 | |||
Transcript | F49B2.6.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F49B2.6.1:c.2146+143C>T | ||||
Intron_number | 11/18 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9301 VarS=CT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y105E8.1 | |||||
[20040130 db] this Allele was previously named snp_Y105E8.1 | |||||
[20090224 db] this Variation was previously named snp_Y105E8[1] | |||||
[20090224 db] original Wicks name : Y105E8A:2419..3359@842 Psnp=0.9301 VarS=CT | |||||
[20090224 db] original Wicks id : eam59f08.s1@45,t,46 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |