WormBase Tree Display for Variation: WBVar00247550
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WBVar00247550 | Name | Public_name | WBVar00247550 | ||
---|---|---|---|---|---|
Other_name | snp_Y53F4B[2] | ||||
haw137702 | |||||
cewivar00145355 | |||||
Y53F4B.6:n.424G>C | |||||
HGVSg | CHROMOSOME_II:g.14986954G>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y53F4B | |
Flanking_sequences | tatgatgatcggagaggcggtggca | tggtggtggtggatacaacgatcgt | |||
Mapping_target | Y53F4B | ||||
Type_of_mutation | Substitution | G | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | SNP_Wicks | |||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00557567 | |||
WBVar01385923 | |||||
Status | Live | ||||
Affects | Gene | WBGene00013153 | |||
Pseudogene | Y53F4B.6 | VEP_consequence | non_coding_transcript_exon_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y53F4B.6:n.424G>C | ||||
cDNA_position | 424 | ||||
Exon_number | 2/2 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
WBPaper00037807 | |||||
Remark | Predicted SNP: Psnp=0.9407 VarS=CG | ||||
Enzymes. Bristol-specific: [BtsI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y53F4B.2 | |||||
[20040130 db] this Allele was previously named snp_Y53F4B.2 | |||||
[20090224 db] original Wicks name : Y53F4B:35421..36307@386 Psnp=0.9407 VarS=CG | |||||
[20090224 db] original Wicks id : yy47e09.s1@459,c,53 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |