WormBase Tree Display for Variation: WBVar00245733
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WBVar00245733 | Name | Public_name | WBVar00245733 | ||
---|---|---|---|---|---|
Other_name | snp_M142[3] | ||||
cewivar00024474 | |||||
M142.3:n.952A>C | |||||
HGVSg | CHROMOSOME_III:g.10928160A>C | ||||
Sequence_details | SMap | S_parent | Sequence | M142 | |
Flanking_sequences | ggagatcttcaacaacgcagccgag | cgtatccgggtttgactaccgccga | |||
Mapping_target | M142 | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (28) | |||||
Laboratory | AX | ||||
Analysis | SNP_Wicks | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01268704 | |||
WBVar01333741 | |||||
Status | Live | ||||
Affects | Gene | WBGene00014809 | |||
Pseudogene | M142.3 | VEP_consequence | non_coding_transcript_exon_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | M142.3:n.952A>C | ||||
cDNA_position | 952 | ||||
Exon_number | 4/6 | ||||
Reference | WBPaper00004703 | ||||
WBPaper00037807 | |||||
Remark | Predicted SNP: Psnp=0.8657 VarS=AC | ||||
Enzymes. Bristol-specific: [Alw26I,BscQII,BsmAI,BsmBI,BsoMAI,BstGZ53I,Esp16I,Esp23I,Esp3I,HpyCH4IV,HpyF13III,HpyF35II,HpyF74II,MaeII,TaiI,TscI,Tsp49I,TspIDSI,TspWAM8AI,TtmI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_M142.3 | |||||
[20040130 db] this Allele was previously named snp_M142.3 | |||||
[20090224 db] original Wicks name : M142:24621..25822@581 Psnp=0.8657 VarS=AC | |||||
[20090224 db] original Wicks id : eam35h03.s1@509,c,38 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |