WormBase Tree Display for Variation: WBVar00245575
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WBVar00245575 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00245575 | |||
Other_name | snp_K09E9[4] | ||||
K09E9.1a.2:c.1390-116_1390-113del | |||||
K09E9.1b.1:c.1420-116_1420-113del | |||||
K09E9.1a.1:c.1390-116_1390-113del | |||||
K09E9.1c.1:c.1198-116_1198-113del | |||||
HGVSg | CHROMOSOME_X:g.15625983_15625986del | ||||
Sequence_details | SMap | S_parent | Sequence | K09E9 | |
Flanking_sequences | aatcagatgccctattatgtcctac | aatgtcctattatgactaaaatccc | |||
Mapping_target | K09E9 | ||||
Type_of_mutation | Deletion | CTAC | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00010724 | |||
Transcript | K09E9.1a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | K09E9.1a.1:c.1390-116_1390-113del | ||||
Intron_number | 10/12 | ||||
K09E9.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K09E9.1c.1:c.1198-116_1198-113del | ||||
Intron_number | 7/8 | ||||
K09E9.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K09E9.1b.1:c.1420-116_1420-113del | ||||
Intron_number | 9/10 | ||||
K09E9.1a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K09E9.1a.2:c.1390-116_1390-113del | ||||
Intron_number | 9/11 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9221 VarD4=CTAC | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_K09E9.4 | |||||
[20040130 db] this Allele was previously named snp_K09E9.4 | |||||
[20090224 db] original Wicks name : K09E9:13878..14772@447 Psnp=0.9221 VarD4=CTAC | |||||
[20090224 db] original Wicks id : yx30f10.s1@377,-,59 | |||||
Method | SNP_Wicks |