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WormBase Tree Display for Variation: WBVar00245575

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Name Class

WBVar00245575EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00245575
Other_namesnp_K09E9[4]
K09E9.1a.2:c.1390-116_1390-113del
K09E9.1b.1:c.1420-116_1420-113del
K09E9.1a.1:c.1390-116_1390-113del
K09E9.1c.1:c.1198-116_1198-113del
HGVSgCHROMOSOME_X:g.15625983_15625986del
Sequence_detailsSMapS_parentSequenceK09E9
Flanking_sequencesaatcagatgccctattatgtcctacaatgtcctattatgactaaaatccc
Mapping_targetK09E9
Type_of_mutationDeletionCTAC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00010724
TranscriptK09E9.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK09E9.1a.1:c.1390-116_1390-113del
Intron_number10/12
K09E9.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK09E9.1c.1:c.1198-116_1198-113del
Intron_number7/8
K09E9.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK09E9.1b.1:c.1420-116_1420-113del
Intron_number9/10
K09E9.1a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK09E9.1a.2:c.1390-116_1390-113del
Intron_number9/11
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9221 VarD4=CTAC
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_K09E9.4
[20040130 db] this Allele was previously named snp_K09E9.4
[20090224 db] original Wicks name : K09E9:13878..14772@447 Psnp=0.9221 VarD4=CTAC
[20090224 db] original Wicks id : yx30f10.s1@377,-,59
MethodSNP_Wicks