WormBase Tree Display for Variation: WBVar00242564
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WBVar00242564 | Evidence | Paper_evidence | WBPaper00035158 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | sa330 | |||||
Other_name | F22E12.4b.3:c.112C>T | ||||||
F22E12.4a.1:c.112C>T | |||||||
F22E12.4b.2:c.112C>T | |||||||
CE27755:p.Gln38Ter | |||||||
F22E12.4b.1:c.112C>T | |||||||
CE38328:p.Gln38Ter | |||||||
CE31342:p.Gln38Ter | |||||||
F22E12.4d.1:c.112C>T | |||||||
HGVSg | CHROMOSOME_V:g.10468980C>T | ||||||
Sequence_details | SMap | S_parent | Sequence | F22E12 | |||
Flanking_sequences | agtcaaccatcttcttctacagctgtttta | agtgtacatattgtggaagctcgtgcacatc | |||||
Mapping_target | F22E12 | ||||||
Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00000635 | ||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Laboratory | JT | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00001178 | |||||
Transcript | F22E12.4b.3 | VEP_consequence | stop_gained | ||||
VEP_impact | HIGH | ||||||
HGVSc | F22E12.4b.3:c.112C>T | ||||||
HGVSp | CE31342:p.Gln38Ter | ||||||
cDNA_position | 112 | ||||||
CDS_position | 112 | ||||||
Protein_position | 38 | ||||||
Exon_number | 2/11 | ||||||
Codon_change | Cag/Tag | ||||||
Amino_acid_change | Q/* | ||||||
F22E12.4b.2 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | F22E12.4b.2:c.112C>T | ||||||
HGVSp | CE31342:p.Gln38Ter | ||||||
cDNA_position | 118 | ||||||
CDS_position | 112 | ||||||
Protein_position | 38 | ||||||
Exon_number | 3/9 | ||||||
Codon_change | Cag/Tag | ||||||
Amino_acid_change | Q/* | ||||||
F22E12.4a.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | F22E12.4a.1:c.112C>T | ||||||
HGVSp | CE27755:p.Gln38Ter | ||||||
cDNA_position | 120 | ||||||
CDS_position | 112 | ||||||
Protein_position | 38 | ||||||
Exon_number | 3/12 | ||||||
Codon_change | Cag/Tag | ||||||
Amino_acid_change | Q/* | ||||||
F22E12.4b.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | F22E12.4b.1:c.112C>T | ||||||
HGVSp | CE31342:p.Gln38Ter | ||||||
cDNA_position | 120 | ||||||
CDS_position | 112 | ||||||
Protein_position | 38 | ||||||
Exon_number | 3/11 | ||||||
Codon_change | Cag/Tag | ||||||
Amino_acid_change | Q/* | ||||||
F22E12.4d.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | F22E12.4d.1:c.112C>T | ||||||
HGVSp | CE38328:p.Gln38Ter | ||||||
cDNA_position | 120 | ||||||
CDS_position | 112 | ||||||
Protein_position | 38 | ||||||
Exon_number | 3/11 | ||||||
Codon_change | Cag/Tag | ||||||
Amino_acid_change | Q/* | ||||||
Genetics | Interpolated_map_position | V | 2.56523 | ||||
Description | Phenotype (4) | ||||||
Phenotype_not_observed | WBPhenotype:0000006 | Paper_evidence | WBPaper00035158 | ||||
Curator_confirmed | WBPerson2021 | ||||||
Remark | sa330 did not cause egg-laying defects | Paper_evidence | WBPaper00035158 | ||||
Curator_confirmed | WBPerson2021 | ||||||
Reference (3) | |||||||
Method | Substitution_allele |