WormBase Tree Display for Variation: WBVar00239397
expand all nodes | collapse all nodes | view schema
| WBVar00239397 | Evidence | Paper_evidence | WBPaper00005783 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | pk1494 | |||||
| Other_name | CE17354:p.Arg37Ter | ||||||
| B0545.1a.1:c.520C>T | |||||||
| B0545.1b.1:c.109C>T | |||||||
| CE17353:p.Arg174Ter | |||||||
| B0545.1b.3:c.109C>T | |||||||
| B0545.1b.2:c.109C>T | |||||||
| HGVSg | CHROMOSOME_IV:g.104113C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | B0545 | |||
| Flanking_sequences | cgcggccatcagttcgtcgccaccttcttc | gacaaccccatttctgttcgttgtgctccg | |||||
| Mapping_target | B0545 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00005783 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Laboratory | NL | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006599 | |||||
| Transcript | B0545.1b.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | B0545.1b.1:c.109C>T | ||||||
| HGVSp | CE17354:p.Arg37Ter | ||||||
| cDNA_position | 622 | ||||||
| CDS_position | 109 | ||||||
| Protein_position | 37 | ||||||
| Exon_number | 8/14 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| B0545.1a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | B0545.1a.1:c.520C>T | ||||||
| HGVSp | CE17353:p.Arg174Ter | ||||||
| cDNA_position | 592 | ||||||
| CDS_position | 520 | ||||||
| Protein_position | 174 | ||||||
| Exon_number | 7/13 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| B0545.1b.3 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | B0545.1b.3:c.109C>T | ||||||
| HGVSp | CE17354:p.Arg37Ter | ||||||
| cDNA_position | 145 | ||||||
| CDS_position | 109 | ||||||
| Protein_position | 37 | ||||||
| Exon_number | 3/9 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| B0545.1b.2 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | B0545.1b.2:c.109C>T | ||||||
| HGVSp | CE17354:p.Arg37Ter | ||||||
| cDNA_position | 495 | ||||||
| CDS_position | 109 | ||||||
| Protein_position | 37 | ||||||
| Exon_number | 6/11 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| Genetics | Interpolated_map_position | IV | -27.0008 | ||||
| Reference | WBPaper00005783 | ||||||
| Method | Substitution_allele |
