WormBase Tree Display for Variation: WBVar00236821
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WBVar00236821 | Name | Public_name | WBVar00236821 | ||
---|---|---|---|---|---|
Other_name | pas48597 | ||||
C34F6.10b.1:c.102-1298del | |||||
C34F6.10c.1:c.102-1298del | |||||
C34F6.10d.1:c.-16-629del | |||||
C34F6.10a.1:c.-16-629del | |||||
HGVSg | CHROMOSOME_X:g.11238010del | ||||
Sequence_details | SMap | S_parent | Sequence | C03A3 | |
Flanking_sequences | atctaaatcaaagagtgtcgaattctcatctttagtgatatatgtgtgcgcacgtattgggttgaaaatagatgtgacgttatataacctcaaaacctagcaagaacaattttggaaatttaagaatcatcaatcaatctagctcttctaaaaatacacgtcatctggcgtgaattttttgggcgaggaaaagcgaggatgagaagcaggttttgtaaaaataactagatgagacaaaataaatgagagggagtatactgctgtgttgcattgcagagaatccccagaagttctgggtgc | ttttttgacgaaaaagttgctgtggcatgttactcagcccacaggcattgaagatgatgctcagcaatgattgagccaactagcttctggcagggtcgcatttattcttgcacggatgagacatgttacataataagatgcattttatctagtatgttttgatgtaacctattagaaaaaaacctaaaactccgcatatcatgtagctaatcactaaactctttacaatcaaatattgccaaacaataaaatcctcaaatgtaaacaaaaagaaaattggcaaaagaataggaaacggt | |||
Mapping_target | C03A3 | ||||
Type_of_mutation | Deletion | T | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Status | Live | ||||
Affects | Gene | WBGene00007944 | |||
Transcript | C34F6.10d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C34F6.10d.1:c.-16-629del | ||||
Intron_number | 1/16 | ||||
C34F6.10c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C34F6.10c.1:c.102-1298del | ||||
Intron_number | 2/15 | ||||
C34F6.10b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C34F6.10b.1:c.102-1298del | ||||
Intron_number | 2/16 | ||||
C34F6.10a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C34F6.10a.1:c.-16-629del | ||||
Intron_number | 1/17 | ||||
Method | WGS_Pasadena_Quinlan |