WormBase Tree Display for Variation: WBVar00235355
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| WBVar00235355 | Name | Public_name | WBVar00235355 | ||
|---|---|---|---|---|---|
| Other_name | pas47131 | ||||
| Y43H11AL.1a.4:c.1084-63del | |||||
| Y43H11AL.1b.1:c.1245-63del | |||||
| Y43H11AL.1a.2:c.1084-63del | |||||
| Y43H11AL.1a.1:c.1084-63del | |||||
| Y43H11AL.1a.3:c.1084-63del | |||||
| Y43H11AL.1d.1:c.270-63del | |||||
| Y43H11AL.1c.1:c.1203-63del | |||||
| HGVSg | CHROMOSOME_II:g.223860del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y43H11AL | |
| Flanking_sequences | aaattcccggcaaatcggcaaattgctggaattgaaaatttccgacaaatctgcaaaatgccggaactgaaatttccggaaatcggcaaatcggcaaaccggcaaattgctacaaactacaaaaaaactacaaagaccacacaccattccattgcaaatgcaccattcctcttgttcacgatatttttttgttctctctcggttcgatatgatcatttcagtgacgcggtctgttagtctgaaaatatgaaaatttcaaaaaaactatatttaaatctgaaaaatatacactttttattc | aaaaaaaggccggaactagcaatatttttggaaaaatcatattacttttggggaatttttatattgaatttcactaaaatggtatctatgcagaaaaaaaaatttaaaattattaaaaaattcagtaaaatctctggaaaagcatcaaaatagccaagaaatagatgggcttatcgttttttttttaaatttttttaaaaatttcatttttttaaattgtgctcgaaattacttgatatctgcaattttaattcttgaaagtttttttttaattcaaaattaaaaaagaaaaatgaaat | |||
| Mapping_target | Y43H11AL | ||||
| Type_of_mutation | Deletion | A | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00021545 | |||
| Transcript | Y43H11AL.1a.3 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1a.3:c.1084-63del | ||||
| Intron_number | 7/10 | ||||
| Y43H11AL.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1c.1:c.1203-63del | ||||
| Intron_number | 6/8 | ||||
| Y43H11AL.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1d.1:c.270-63del | ||||
| Intron_number | 2/4 | ||||
| Y43H11AL.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1b.1:c.1245-63del | ||||
| Intron_number | 8/11 | ||||
| Y43H11AL.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1a.1:c.1084-63del | ||||
| Intron_number | 7/10 | ||||
| Y43H11AL.1a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1a.2:c.1084-63del | ||||
| Intron_number | 7/8 | ||||
| Y43H11AL.1a.4 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43H11AL.1a.4:c.1084-63del | ||||
| Intron_number | 7/9 | ||||
| Method | WGS_Pasadena_Quinlan |
