WormBase Tree Display for Variation: WBVar00233473
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WBVar00233473 | Name | Public_name | WBVar00233473 | ||
---|---|---|---|---|---|
Other_name | pas45249 | ||||
T23F4.2b.1:c.249+89del | |||||
T23F4.2a.1:c.249+89del | |||||
T23F4.2d.1:c.24+89del | |||||
T23F4.2c.1:c.24+89del | |||||
HGVSg | CHROMOSOME_II:g.1164064del | ||||
Sequence_details | SMap | S_parent | Sequence | T23F4 | |
Flanking_sequences | aaaattaaaaaaaaaaagcaaaaaatttttcaaaaaaaatttcaaaaatttttcaaaaaaaaaaattctaaaaattttcagcttcccgccacaactctaccaagcgtactccatcatggcgtccacttttcactggacagggtaaaaagaaaagttcaaagcccaaatatctacaggatggccggaaaatgacagaagatgggcatgacgaggttggtattttttctatttttacaacaaaaaaatttgtaaaaatctgagctttttctgtttaaacatgctattctagccaaaaaaaaa | aatcaaaaatttgaattcccgctgaccccacgctgcaagcacgctccaatgctaaattagcaatggagcgcgtttggccagccggatttcagaatttttaaattcaaattgaagtctttaggccaatttctgtaatttttcagccaaataagctttgggaagagcttttcctccgttcattcgcccacaaaattgagcaggaaatctcgtcgccgagcccacttgaagcacacaaaaatctgaattcggaactctcaaaactcaatattcaaggtaaatttttggtttttcttaatttt | |||
Mapping_target | T23F4 | ||||
Type_of_mutation | Deletion | G | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Status | Live | ||||
Affects | Gene | WBGene00020740 | |||
Transcript | T23F4.2a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T23F4.2a.1:c.249+89del | ||||
Intron_number | 3/6 | ||||
T23F4.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T23F4.2b.1:c.249+89del | ||||
Intron_number | 3/6 | ||||
T23F4.2d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T23F4.2d.1:c.24+89del | ||||
Intron_number | 1/3 | ||||
T23F4.2c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T23F4.2c.1:c.24+89del | ||||
Intron_number | 1/3 | ||||
Method | WGS_Pasadena_Quinlan |