WormBase Tree Display for Variation: WBVar00233117
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| WBVar00233117 | Name | Public_name | WBVar00233117 | ||
|---|---|---|---|---|---|
| Other_name | pas44893 | ||||
| W08A12.1e.1:c.66+431del | |||||
| W08A12.1b.3:c.141+431del | |||||
| W08A12.1b.1:c.141+431del | |||||
| W08A12.1a.1:c.47+431del | |||||
| W08A12.1c.1:c.123+431del | |||||
| W08A12.1b.2:c.141+431del | |||||
| HGVSg | CHROMOSOME_V:g.3692489del | ||||
| Sequence_details | SMap | S_parent | Sequence | W08A12 | |
| Flanking_sequences | tcagagtgtcccatttcggcttgatctacgtagatctacaaaaaatgcggcagagtactcaactgatttcgtatggtcaagaacgtgctgacgtcatcatatattttaaggaaaaaattcccgcattttttgtagatcaaaccgtgatgggacaacctggtatcaccttttacagtgtacgtataatcttattgcatagcggcattttttacttatttccgtttttttttcacttcttctacatttttttcatacaataatagaattttaaatacctccacacactgaataaataagatg | ttttttttcactctgttccctcagtgctgctaaaaacacaaaacgaaaacatgttgtgttttccatgtttttctcacttgaatgttcgccggtgttggtttttgaactgttaggctccgccccaatgttctcttccgcttgataaggatgattgttcctgtcccatgtcgaggtccgaatcgcattagttgtcaagtcaactgttgctaatggataccataatgtttcgatttttggtcgtgttgtgtgatgacactatataaatcatgcccgaatttaacacacacacatacactctg | |||
| Mapping_target | W08A12 | ||||
| Type_of_mutation | Deletion | T | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00021078 | |||
| Transcript | W08A12.1b.3 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | W08A12.1b.3:c.141+431del | ||||
| Intron_number | 3/7 | ||||
| W08A12.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W08A12.1a.1:c.47+431del | ||||
| Intron_number | 2/7 | ||||
| W08A12.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W08A12.1c.1:c.123+431del | ||||
| Intron_number | 3/7 | ||||
| W08A12.1b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W08A12.1b.2:c.141+431del | ||||
| Intron_number | 4/8 | ||||
| W08A12.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W08A12.1b.1:c.141+431del | ||||
| Intron_number | 4/8 | ||||
| W08A12.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W08A12.1e.1:c.66+431del | ||||
| Intron_number | 1/4 | ||||
| Method | WGS_Pasadena_Quinlan |
