WormBase Tree Display for Variation: WBVar00232719
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| WBVar00232719 | Name | Public_name | WBVar00232719 | ||
|---|---|---|---|---|---|
| Other_name | pas44495 | ||||
| haw137638 | |||||
| cewivar00102076 | |||||
| E01F3.1f.1:c.304-2179T>C | |||||
| E01F3.1e.1:c.604-2179T>C | |||||
| E01F3.1j.1:c.445-2179T>C | |||||
| E01F3.1g.1:c.304-2179T>C | |||||
| E01F3.1b.1:c.445-2179T>C | |||||
| E01F3.1i.1:c.604-2179T>C | |||||
| HGVSg | CHROMOSOME_II:g.14943038T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | E01F3 | |
| Flanking_sequences | ccgctacttcccattaacggtttattctgctagaataagcagccgacgttttacggttgcactacttttggtaaaacttttcctgctgaaactgtaagcggccgacatttcgcggcctcgaacatcttaagagtattttaacctgtaaattgtcggatgcaactttcaattgcttccatttctacttccacacaaaatataattgctagaatctaagcgcccgctgcctccattaacacagttttctgcgaaaataagcagccgacggtttactggttcagtacttgggaggcgttacct | ccaacaacccccttatcataatatttacattcatttctggtcactcaactacaaacaatgctctattgaattcaaatttttcaatatctagcatgtctattcaattcagcatccctataattttcgctcacatattgaacacatttcatagtctgcttttttcgtttttctacttttaagcctttcaccgtgcaattagtcttccgcatctttgaccccaattattccgcaaatttatgaaaataataatgacgcacaagctcttggaaaatgagcaaaatgatggcacaaggaaaaaag | |||
| Mapping_target | E01F3 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (109) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar00557503 | |||
| WBVar01321410 | |||||
| WBVar01385803 | |||||
| WBVar01254009 | |||||
| WBVar01442634 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00008443 | |||
| Transcript | E01F3.1i.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1i.1:c.604-2179T>C | ||||
| Intron_number | 4/12 | ||||
| E01F3.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1e.1:c.604-2179T>C | ||||
| Intron_number | 4/12 | ||||
| E01F3.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1b.1:c.445-2179T>C | ||||
| Intron_number | 5/14 | ||||
| E01F3.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1f.1:c.304-2179T>C | ||||
| Intron_number | 2/10 | ||||
| E01F3.1j.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1j.1:c.445-2179T>C | ||||
| Intron_number | 3/11 | ||||
| E01F3.1g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | E01F3.1g.1:c.304-2179T>C | ||||
| Intron_number | 3/12 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
