WormBase Tree Display for Variation: WBVar00230582
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| WBVar00230582 | Name | Public_name | WBVar00230582 | ||
|---|---|---|---|---|---|
| Other_name | pas42358 | ||||
| haw134942 | |||||
| cewivar00015713 | |||||
| Y46G5A.4.1:c.6306G>A | |||||
| CE21971:p.Gly2102= | |||||
| HGVSg | CHROMOSOME_II:g.12727439C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y46G5A | |
| Flanking_sequences | aggggaagatcatagtgtttttgaatgagaaatatttagattttaaaaattttttaagggaaaaccaaaaattgataagaaaatgggtgtgattttgagagttgaaaagaataataataataatacaaataaaataaaaatgaccagggagtgggtgacggcggcggcttaatcctcttccttctcgtgctttcgcttgcgattgctgcgtcccggctcctcaaccttgaaggcgacgtcgaattcctgatccgcgccgaggtacgagtccgagatgaagaagagcttgaatttgtggtg | ccgggtcgtggagcggcaaagtccaactgaaccgacgacttttcgttgatcacaagtctgaaagttgagatttttaattttgaaattataaatttgttaaaattataatttataaatttataaaaataactcgaaaaccaaaaattcgaattttctccaatatttcagaaaactctcccataccttttaatagtcaacaatgcattggattcggaatctccaataaccaaccaccatccctcttcctttcgtttctgcgggaacaatggtgcgacgacgggcggtgcgagtccatcaata | |||
| Mapping_target | Y46G5A | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (149) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01440985 | |||
| WBVar01380212 | |||||
| WBVar01248756 | |||||
| WBVar00554807 | |||||
| WBVar01440984 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00012896 | |||
| Transcript | Y46G5A.4.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y46G5A.4.1:c.6306G>A | ||||
| HGVSp | CE21971:p.Gly2102= | ||||
| cDNA_position | 6341 | ||||
| CDS_position | 6306 | ||||
| Protein_position | 2102 | ||||
| Exon_number | 13/14 | ||||
| Codon_change | ggG/ggA | ||||
| Amino_acid_change | G | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
