WormBase Tree Display for Variation: WBVar00227856
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WBVar00227856 | Evidence | Paper_evidence | WBPaper00040707 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00227856 | |||
Other_name | pas39632 | ||||
cewivar00093378 | |||||
M176.6b.1:c.1101-13T>A | |||||
M176.6a.1:c.1281-13T>A | |||||
HGVSg | CHROMOSOME_II:g.9431694A>T | ||||
Sequence_details | SMap | S_parent | Sequence | M176 | |
Flanking_sequences | catctttattcaaaagccaaactaaaatagaaaaataaaaaaagccattagtctctccgaatccaatcctctaatttgctctgtcgttccgcttctgatttcagcgttttttgaatttgttccagaagctgaaatttaaaaaaatcatatttaaaataacttgaaatattttttaatcttacgttagtagcagatacactcaaatgttcttcgaagaattccacacacttggagaagctgggtcgaaatgttgcatcgaaattccaaaattgtttcattcgatcgtacctaaattttttt | aaagttttattctagaagtttgagtttcccagcgattgattatgctaacattttaggatgacaatactgtggcattggaagttgatttccctgaacaacatgctcaaaaacatcactgttggatacatttgaatatggtaattctcccaatgagaacatttcataaagactaacaccatacgaccacacatccgatttttctgtgcattttccttctctcataacttctggagccatccatctagcaggcataggagttcctacacctttcgttattctgaaaattttatgtaatgttta | |||
Mapping_target | M176 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (36) | |||||
Laboratory | QX | ||||
Person | WBPerson6900 | ||||
WBPerson1730 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01439088 | |||
Status | Live | ||||
Affects | Gene | WBGene00002199 | |||
Transcript | M176.6b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | M176.6b.1:c.1101-13T>A | ||||
Intron_number | 7/9 | ||||
M176.6a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | M176.6a.1:c.1281-13T>A | ||||
Intron_number | 8/10 | ||||
Reference | WBPaper00040707 | ||||
Method | WGS_Pasadena_Quinlan |