WormBase Tree Display for Variation: WBVar00227793
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| WBVar00227793 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00227793 | |||
| Other_name | pas39569 | ||||
| cewivar00093269 | |||||
| C06C3.1b.1:c.1710T>A | |||||
| CE20486:p.Ser567= | |||||
| C06C3.1c.1:c.1701T>A | |||||
| C06C3.1a.1:c.1701T>A | |||||
| CE36682:p.Ser567= | |||||
| C06C3.1d.1:c.1701T>A | |||||
| CE32567:p.Ser567= | |||||
| CE32566:p.Ser570= | |||||
| HGVSg | CHROMOSOME_II:g.9363350T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | C06C3 | |
| Flanking_sequences | accggaacgacgtcatcgtcgtcacggttcacatcatcaactccatcgtcacaaagatcagcagcaggttcagtgcatacagaaacaccacgatcttcgatggtaagttcattattactgacttttttaaaaattaaaatcagttcttatctcctgctagcgttttaaggaaaactcatcatcagtgggaagcggtgatcaaaatgtcagtgcaacgataccgattgttccattatcagctccaccgaaagcagttcatcagagcccgagctcatggattaatagaggagttcctctgtc | tcaaggtatccatatttgatatgaattctaagaaatttagtgataggacgtgtgaactattatggggttattcaagtagtgtcggaaaattaaaaagtgtagaaaaattacgtcacaactgtattaaaatacataaaaacatgtatttttatacatttgtgacgtcacaaatgtatttaaatacatttttctacataacttgaataaaaccccattagaaaatatgatttgcacaaaatatgactatgcttattgtcacaataaaaacaaaaagaagaagaatatgctgatgattcatat | |||
| Mapping_target | C06C3 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (99) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01439071 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00003196 | |||
| Transcript | C06C3.1b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C06C3.1b.1:c.1710T>A | ||||
| HGVSp | CE32566:p.Ser570= | ||||
| cDNA_position | 1714 | ||||
| CDS_position | 1710 | ||||
| Protein_position | 570 | ||||
| Exon_number | 8/17 | ||||
| Codon_change | tcT/tcA | ||||
| Amino_acid_change | S | ||||
| C06C3.1a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C06C3.1a.1:c.1701T>A | ||||
| HGVSp | CE20486:p.Ser567= | ||||
| cDNA_position | 1702 | ||||
| CDS_position | 1701 | ||||
| Protein_position | 567 | ||||
| Exon_number | 8/17 | ||||
| Codon_change | tcT/tcA | ||||
| Amino_acid_change | S | ||||
| C06C3.1d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C06C3.1d.1:c.1701T>A | ||||
| HGVSp | CE36682:p.Ser567= | ||||
| cDNA_position | 1704 | ||||
| CDS_position | 1701 | ||||
| Protein_position | 567 | ||||
| Exon_number | 8/16 | ||||
| Codon_change | tcT/tcA | ||||
| Amino_acid_change | S | ||||
| C06C3.1c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C06C3.1c.1:c.1701T>A | ||||
| HGVSp | CE32567:p.Ser567= | ||||
| cDNA_position | 1704 | ||||
| CDS_position | 1701 | ||||
| Protein_position | 567 | ||||
| Exon_number | 8/18 | ||||
| Codon_change | tcT/tcA | ||||
| Amino_acid_change | S | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
