WormBase Tree Display for Variation: WBVar00227256
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| WBVar00227256 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00227256 | |||
| Other_name | pas39032 | ||||
| cewivar00052562 | |||||
| B0399.1f.1:c.190-264T>C | |||||
| B0399.1b.1:c.340-264T>C | |||||
| B0399.1a.1:c.384T>C | |||||
| CE31869:p.Thr128= | |||||
| HGVSg | CHROMOSOME_V:g.19585327T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | B0399 | |
| Flanking_sequences | tttttttcctggaattttcgtaattttacattaaaaattactctaaaaatgagttgtctgtctttccttgttttctcagtcgtctctaaatttttgcgcacttttttctctcttttggacgtgtcgaaatatgattttcctttattcaaatttactcaattttcctcttgctcggcgccgcctcctcctcctctttccgaaaaaaaacgtcttttcgaacatctttttttgctcaatttttttgtcaatattctagatgaattccgacgactcggaatcgccgttaaatcgccgaaaaac | gagccaaaacgggtattgggcaccaaaaatggctcattgtctgtgacgccgggcgagaagaacgagggacgcgatagggcgttttccatgtattcggtagggtttttgggggcgaaaatgggaagttaaagtgaaaaaaagtaattttggatggttttagaaattttgaaaaaaaaaattttttggaaaactttttttccaaaaaaaattttttttttcaaaaattgtttttttcaaaagttttaaattttccacatttccaggtttcatcggacattttacgtgtttctggttacactc | |||
| Mapping_target | B0399 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (129) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01466038 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00007176 | |||
| WBGene00305239 | |||||
| Transcript | B0399.1b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0399.1b.1:c.340-264T>C | ||||
| Intron_number | 4/14 | ||||
| B0399.4 | |||||
| B0399.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0399.1f.1:c.190-264T>C | ||||
| Intron_number | 3/12 | ||||
| B0399.1a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | B0399.1a.1:c.384T>C | ||||
| HGVSp | CE31869:p.Thr128= | ||||
| cDNA_position | 384 | ||||
| CDS_position | 384 | ||||
| Protein_position | 128 | ||||
| Exon_number | 4/15 | ||||
| Codon_change | acT/acC | ||||
| Amino_acid_change | T | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
