WormBase Tree Display for Variation: WBVar00225409
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| WBVar00225409 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00225409 | |||
| Other_name | pas37185 | ||||
| cewivar00119324 | |||||
| ZK54.2a.1:c.3396T>C | |||||
| ZK54.2b.1:c.3285T>C | |||||
| CE30330:p.Gly1095= | |||||
| CE07617:p.Gly1132= | |||||
| HGVSg | CHROMOSOME_X:g.17468457A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | R106 | |
| Flanking_sequences | ttcagtcgttctctaaccagacggataccgtgacctttgttaaaaattctccccttcagttttgcctgcaattttccatttttgaatatttctttcctttttttttgaaacacatacttttacataaatcttgaagtcaaggtccgactcgcgcattgtgagagttgtgccgttcgggtcaaaatcattaactatcttgacaagttgctcataaagtctgattacttttcgggatggaattgttccattcacatcttgcttggcaatagtaatgtgcccacaatgtttttgaattccact | ccaatccatttgaagatgcggaactctgggcgttcaaggagttcctcgatctgaacgttgaacaaattaaaattttgtacctagttgttcacttacaatgtcaaacaccttgttcatcaagttcagatcaattgccgaaaacgatcgatccttgaattgttgagcaggatttaagtaccattctctaccagcagaagcaccatacgcgtagtatccttctggaattgttgcgacttccaaaattccagtatgaagcagcggggctgtagtaacaattgcacagaaagttgcacaacgacg | |||
| Mapping_target | R106 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (55) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01473535 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00006602 | |||
| Transcript | ZK54.2b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | ZK54.2b.1:c.3285T>C | ||||
| HGVSp | CE30330:p.Gly1095= | ||||
| cDNA_position | 3285 | ||||
| CDS_position | 3285 | ||||
| Protein_position | 1095 | ||||
| Exon_number | 18/20 | ||||
| Codon_change | ggT/ggC | ||||
| Amino_acid_change | G | ||||
| ZK54.2a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | ZK54.2a.1:c.3396T>C | ||||
| HGVSp | CE07617:p.Gly1132= | ||||
| cDNA_position | 3402 | ||||
| CDS_position | 3396 | ||||
| Protein_position | 1132 | ||||
| Exon_number | 20/23 | ||||
| Codon_change | ggT/ggC | ||||
| Amino_acid_change | G | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
