WormBase Tree Display for Variation: WBVar00224763
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| WBVar00224763 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00224763 | |||
| Other_name | pas36539 | ||||
| cewivar00049398 | |||||
| C54E10.2b.1:c.189A>C | |||||
| CE44784:p.Ala63= | |||||
| CE34776:p.Ala142= | |||||
| C54E10.2a.1:c.426A>C | |||||
| HGVSg | CHROMOSOME_V:g.18829807A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | C54E10 | |
| Flanking_sequences | attccaactttagagctaatttcaaacttttttccagtttaaaattttgaacccaattttcgaccatttctgagattttttctacgctgaaacttaactttttgaattcggaacccagaagttaccccaaaacaagaaaataaaaatttttgccacagtgcggactcgagcccaggtcttgtgattggtagacggtgaaaatcccactgtgccattttgaaaaaattgtttttttcaggaatcacctaccggtaaaatgaaagaagaagaattccgaaacctgctcgcctcaataattgc | ccggaaaaagccacggatcagtatatttcaaggctttttacggcgttcgccggggtcgacaagaagactatcacttttgaggtaagttttctataggaaaatcaaattttttttatttgaaactgtgaaatttgaattcagcgtcattgaattaccgtgaaaaaaacaaaataaaaatttttgccacagtgcggactcgaaccccggtcttgtgattagaaaccggtgaaaatcccactgagccattcggacacttctttcaaaaatgctccaaaattgatttttagcgcttttcatcaa | |||
| Mapping_target | C54E10 | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (121) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01465556 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00008307 | |||
| Transcript | C54E10.2b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C54E10.2b.1:c.189A>C | ||||
| HGVSp | CE44784:p.Ala63= | ||||
| cDNA_position | 189 | ||||
| CDS_position | 189 | ||||
| Protein_position | 63 | ||||
| Exon_number | 2/5 | ||||
| Codon_change | gcA/gcC | ||||
| Amino_acid_change | A | ||||
| C54E10.2a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C54E10.2a.1:c.426A>C | ||||
| HGVSp | CE34776:p.Ala142= | ||||
| cDNA_position | 531 | ||||
| CDS_position | 426 | ||||
| Protein_position | 142 | ||||
| Exon_number | 4/8 | ||||
| Codon_change | gcA/gcC | ||||
| Amino_acid_change | A | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
