WormBase Tree Display for Variation: WBVar00224547
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| WBVar00224547 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00224547 | |||
| Other_name | pas36323 | ||||
| cewivar00048822 | |||||
| CE22824:p.Phe56= | |||||
| Y69H2.6.1:c.168C>T | |||||
| HGVSg | CHROMOSOME_V:g.18688485G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y69H2 | |
| Flanking_sequences | atgattatacttatttaaaagctctttgcaagctgatttagattttcaaagaatttttcaaaattttcagcaactaacctgcaaaaccaccagtacccgtctcaggctatgcttttcctttttccatccttctggaaatgaccggttcaggcataactccttggattttgtgcaaatcagtgggtggaataggtttgactgctcaaaaatcacacgtggtagatcagaagcgtccgggaattccagcggaatgtgaatgttgaatcggaaaattccgccgccaaaaatcccttttcgcac | aaaatcacaccgaaccatactgaaattttgggtttttctaaattttcaatgtaaattttcgagttcagctcactgagagctttcaaataagtacaatcatgactaggttgtgaaatttttttattgatttttgaattttgggtcccaccacgaaaatattgaaactaccgtaacctagcgaatattgcagcaaatatggaattttttttaattttcgagttcagctcactgagagctttcaaataagtataatcatgactaggttcaaaaaattttattgattttggaattttgggtccc | |||
| Mapping_target | Y69H2 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (114) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01465495 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00305869 | |||
| WBGene00006714 | |||||
| Transcript | Y69H2.29 | ||||
| Y69H2.6.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y69H2.6.1:c.168C>T | ||||
| HGVSp | CE22824:p.Phe56= | ||||
| cDNA_position | 173 | ||||
| CDS_position | 168 | ||||
| Protein_position | 56 | ||||
| Exon_number | 4/8 | ||||
| Codon_change | ttC/ttT | ||||
| Amino_acid_change | F | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
