WormBase Tree Display for Variation: WBVar00223670

WBVar00223670 Name: Public_name: WBVar00223670
    Other_name (16)
    HGVSg: CHROMOSOME_II:g.5219040C>T
  Sequence_details: SMap: S_parent: Sequence: C34F11
    Flanking_sequences: ttgaatgtaaatttttttcaatgttgcatattccttgagatagccctgcaagacctgaatgtagccctattataacttaaacttttgctttaattttttataaataaaaatttgccgaataaaatacactaaattttgaaaggaacactgtcaccagagtactggctttacataaaaattcaatgaaatgaaacctatgtttataaaattaaaaaaaaaaacatacctatcatcatcatctgaaaatactcttgcatcggattcggagccaattgttgattcttcgagatgtcgtcggtg cctggaatttaagaaaacttagaattcgatgctttttcaaattttcataagattttgttttttgaacctattaccctttacttgatcacatcatttttcgccatcatttacctaccgatcaaataaaacgatgcatctgcactaagttcagaggttaaggatagatgtgacgtcctatgtagaaatccaataagatgtcttctcggcgaagcatccggtgcaacatctttccttccttgataagtacttgttgtatttgatccgccgtaccttcgcattctgcgcttctgtgctcgatcc
    Mapping_target: C34F11
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (69)
    Laboratory: QX
      AX
    Person: WBPerson6900
      WBPerson1730
    Analysis: WGS_Pasadena_Quinlan
      WGS_De_Bono
      Million_mutation_project_reanalysis
      WGS_Andersen
    History: Acquires_merge: WBVar01239970
        WBVar01437734
    Status: Live
  Affects: Gene: WBGene00001101
    Transcript: C34F11.9f.1 VEP_consequence: splice_region_variant,synonymous_variant
        VEP_impact: LOW
        HGVSc: C34F11.9f.1:c.96G>A
        HGVSp: CE50486:p.Gly32=
        cDNA_position: 96
        CDS_position: 96
        Protein_position: 32
        Exon_number: 2/9
        Codon_change: ggG/ggA
        Amino_acid_change: G
      C34F11.9e.1 VEP_consequence: splice_region_variant,synonymous_variant
        VEP_impact: LOW
        HGVSc: C34F11.9e.1:c.1521G>A
        HGVSp: CE50427:p.Gly507=
        cDNA_position: 1521
        CDS_position: 1521
        Protein_position: 507
        Exon_number: 2/10
        Codon_change: ggG/ggA
        Amino_acid_change: G
      C34F11.9c.1 VEP_consequence: splice_region_variant,synonymous_variant
        VEP_impact: LOW
        HGVSc: C34F11.9c.1:c.684G>A
        HGVSp: CE43370:p.Gly228=
        cDNA_position: 692
        CDS_position: 684
        Protein_position: 228
        Exon_number: 7/16
        Codon_change: ggG/ggA
        Amino_acid_change: G
      C34F11.9b.1 VEP_consequence: splice_region_variant,synonymous_variant
        VEP_impact: LOW
        HGVSc: C34F11.9b.1:c.1521G>A
        HGVSp: CE48076:p.Gly507=
        cDNA_position: 1558
        CDS_position: 1521
        Protein_position: 507
        Exon_number: 3/10
        Codon_change: ggG/ggA
        Amino_acid_change: G
      C34F11.9a.1 VEP_consequence: splice_region_variant,synonymous_variant
        VEP_impact: LOW
        HGVSc: C34F11.9a.1:c.684G>A
        HGVSp: CE43333:p.Gly228=
        cDNA_position: 693
        CDS_position: 684
        Protein_position: 228
        Exon_number: 7/14
        Codon_change: ggG/ggA
        Amino_acid_change: G
      C34F11.9d.1 VEP_consequence: splice_region_variant,synonymous_variant
        VEP_impact: LOW
        HGVSc: C34F11.9d.1:c.96G>A
        HGVSp: CE50407:p.Gly32=
        cDNA_position: 96
        CDS_position: 96
        Protein_position: 32
        Exon_number: 2/10
        Codon_change: ggG/ggA
        Amino_acid_change: G
      C34F11.9b.2 VEP_consequence: splice_region_variant,synonymous_variant
        VEP_impact: LOW
        HGVSc: C34F11.9b.2:c.1521G>A
        HGVSp: CE48076:p.Gly507=
        cDNA_position: 2254
        CDS_position: 1521
        Protein_position: 507
        Exon_number: 8/15
        Codon_change: ggG/ggA
        Amino_acid_change: G
      C34F11.9a.2 VEP_consequence: splice_region_variant,synonymous_variant
        VEP_impact: LOW
        HGVSc: C34F11.9a.2:c.684G>A
        HGVSp: CE43333:p.Gly228=
        cDNA_position: 700
        CDS_position: 684
        Protein_position: 228
        Exon_number: 7/15
        Codon_change: ggG/ggA
        Amino_acid_change: G
  Reference: WBPaper00040707
    WBPaper00037807
  Method: WGS_Pasadena_Quinlan