WormBase Tree Display for Variation: WBVar00220076
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| WBVar00220076 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00220076 | |||
| Other_name | pas31852 | ||||
| cewivar00087785 | |||||
| F02E11.7c.1:c.118+423C>T | |||||
| F02E11.7a.1:c.-388C>T | |||||
| HGVSg | CHROMOSOME_II:g.3268210C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F02E11 | |
| Flanking_sequences | gttacatgtggcaaaagattgctagtttttccccctcccgtcagtttcctgtttgccctcccgagtgtcactttgctgtgcagtcatgtccgagtggttaaggagattgactagaaatcaattgggctctgcccgcgtaggttcgaatcctgctgactgcgttacgttttttgcttctcttggaagtagagaattgctttaaaaattagattttcggggtataagtcgattttttttttgaaaaaaaatcattgactagtttgaattcttcatgttttgttagtctaagcttagcagaac | tttattttagcaagaagctctgaaattatttaaatatcagtgtttgcgtacttctgggggtacagtaacccgcgaaatttcaaaattgagctagaaggttctagtttttgagcttcagactaaaattttacgaggaattcgaatttttaattaaaacttgaaaattttcacttcccgacaggggaaaaccgggcactttcgaagatgatcattaatcaagaaacaaaaaaaaaatttgctcgagtctaaccaattgaaaaatcgctacacatttgttggatgacaatgcaaatatttgac | |||
| Mapping_target | F02E11 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (27) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01436879 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00195073 | |||
| Transcript | F02E11.7c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F02E11.7c.1:c.118+423C>T | ||||
| Intron_number | 2/4 | ||||
| F02E11.7a.1 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F02E11.7a.1:c.-388C>T | ||||
| cDNA_position | 545 | ||||
| Exon_number | 1/5 | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
